chr21 : 35,525,807 35,526,243
436 bp 59 TFs 2 linked genes
This 436 bp open chromatin element is linked to RUNX1 and CLIC6 and is bound by 59 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RUNX1 637.3 kb Distal Multiome+HiCAR
CLIC6 857.0 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr21:35,520,807 – 35,531,243
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AR 6 datasets
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 236 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 135 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 182 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 180 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 87 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 130 bp overlap
BRD4 5 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 170 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 101 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 101 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 193 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 161 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 65 bp overlap
CEBPB 3 datasets
ChIP HCT116 ENCFF097OLY 141 bp overlap
ChIP HeLa-S3 ENCFF722WEG 55 bp overlap
ChIP IMR-90 ENCFF468UGY 52 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 96 bp overlap
ChIP K562 ENCFF783ADE 197 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 265 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 191 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 124 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 175 bp overlap
FOSL1 3 datasets
ChIP HCT116 ENCFF540ZXN 82 bp overlap
ChIP K562 ENCFF455MKD 157 bp overlap
ChIP K562 ENCFF455MKD 359 bp overlap
FOXA1 2 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 73 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 114 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 269 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 175 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 63 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 233 bp overlap
GATA2 10 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 181 bp overlap
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 152 bp overlap
ChIP K-562 ENCSR000DKA.GATA2.K-562 263 bp overlap
ChIP K562 ENCFF088XQT 227 bp overlap
ChIP K562 ENCFF830LLA 381 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 189 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 180 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 118 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 319 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 352 bp overlap
GATA3 3 datasets
ChIP Jurkat GSE120063.GATA3.Jurkat 226 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 178 bp overlap
ChIP SK-N-SH ENCFF040SSB 138 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 213 bp overlap
ChIP DE DE-GATA4-1 393 bp overlap
ChIP DE DE-GATA4-2 436 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 371 bp overlap
ChIP DE DE-GATA6-2 436 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 257 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 436 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 248 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 366 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 324 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 148 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 392 bp overlap
GFI1 2 datasets
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
ChIP NB4 GSE128528.GFI1.NB4 274 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 67 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 179 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 62 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 196 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 267 bp overlap
NFYA 1 dataset
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_72h DE_72h-NFYB_MA0502.3 9 bp overlap
NFYC 1 dataset
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 52 bp overlap
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 170 bp overlap
ONECUT2 1 dataset
ChIP PC-3_hypoxia GSE106305.ONECUT2.PC-3_hypoxia 57 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 352 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 280 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 280 bp overlap
SMAD3 1 dataset
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 80 bp overlap
SOX12 1 dataset
Motif DE_72h DE_72h-SOX12_MA1561.2 10 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX14 2 datasets
Motif DE_72h DE_72h-SOX14_MA1562.2 9 bp overlap
Motif DE_72h DE_72h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 314 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 411 bp overlap
SOX18 1 dataset
Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 271 bp overlap
SOX8 2 datasets
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
STAT3 1 dataset
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 161 bp overlap
Sox11 1 dataset
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 242 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 252 bp overlap
TOP2A 1 dataset
ChIP KG-1_etoposide GSE114048.TOP2A.KG-1_etoposide 101 bp overlap
TP53 1 dataset
ChIP MDA-MB-231 GSE95303.TP53.MDA-MB-231 123 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 55 bp overlap
ZBTB40 4 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 110 bp overlap
ChIP K-562 ENCSR158RYZ.ZBTB40.K-562 86 bp overlap
ChIP K562 ENCFF521DSV 125 bp overlap
ChIP K562 ENCFF952IUD 93 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF701 1 dataset
Motif DE_72h DE_72h-ZNF701_MA1987.2 17 bp overlap