chr20 : 45,440,774 45,441,531
757 bp 56 TFs 6 linked genes
This 757 bp open chromatin element is linked to 6 target genes and is bound by 56 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
PIGT 25.0 kb Distal Multiome
WFDC2 28.6 kb Distal Multiome
DBNDD2 35.0 kb Distal Multiome
TP53TG5 35.1 kb Distal Multiome
SYS1 78.0 kb Distal Multiome
SDC4 92.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:45,435,774 – 45,446,531
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 110 bp overlap
CTCF 1 dataset
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 99 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 326 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 709 bp overlap
ChIP DE DE-FOXA2-2 738 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 118 bp overlap
GATA2 1 dataset
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 665 bp overlap
ChIP DE DE-GATA4-2 757 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 264 bp overlap
GATA5 2 datasets
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 512 bp overlap
ChIP DE DE-GATA6-2 757 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 757 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 670 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 756 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 595 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 757 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 514 bp overlap
ChIP foregut GSE117136.GATA6.foregut 292 bp overlap
GRHL2 1 dataset
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 79 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gata3 2 datasets
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 567 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 419 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 470 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 313 bp overlap
KLF13 1 dataset
Motif DE_72h DE_72h-KLF13_MA0657.2 17 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 188 bp overlap
NFE2 1 dataset
Motif DE_72h DE_72h-NFE2_MA0841.2 10 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU1F1 1 dataset
Motif DE_72h DE_72h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_72h DE_72h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_72h DE_72h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_72h DE_72h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_72h DE_72h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_72h DE_72h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_72h DE_72h-POU3F4_MA0789.1 9 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 344 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 361 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 348 bp overlap
PROX1 1 dataset
Motif DE_72h DE_72h-PROX1_MA0794.1 12 bp overlap
Prdm14 1 dataset
Motif DE_72h DE_72h-Prdm14_MA1998.2 8 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SMAD2 2 datasets
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 202 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 757 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 757 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 174 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 757 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 757 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 757 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 757 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 757 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 225 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 317 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 555 bp overlap
SOX15 1 dataset
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 341 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 498 bp overlap
SRF 1 dataset
Motif DE_72h DE_72h-SRF_MA0083.3 16 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
TEAD4 1 dataset
ChIP SNU-216 GSE44416.TEAD4.SNU-216 185 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 68 bp overlap
TRPS1 2 datasets
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
ZNF274 1 dataset
Motif DE_72h DE_72h-ZNF274_MA1592.2 12 bp overlap
ZNF766 1 dataset
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap