chr20 : 5,136,096 5,136,642
546 bp 45 TFs 1 linked gene
This 546 bp open chromatin element is linked to CDS2 and is bound by 45 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CDS2 9.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:5,131,096 – 5,141,642
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 438 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 337 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 65 bp overlap
BRD4 3 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 106 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 546 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 251 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 222 bp overlap
CREB1 1 dataset
ChIP A-549 ENCSR000BRB.CREB1.A-549 131 bp overlap
CTCF 1 dataset
ChIP dorsolateral prefrontal cortex ENCFF628TCI 60 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 329 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 160 bp overlap
ERG 1 dataset
ChIP SEM GSE117864.ERG.SEM 111 bp overlap
ESR1 2 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 248 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 155 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 112 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 328 bp overlap
ChIP DE DE-FOXA2-2 303 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 161 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 435 bp overlap
ChIP DE DE-GATA4-2 499 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 382 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 406 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 419 bp overlap
ChIP DE DE-GATA6-2 546 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 319 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 335 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 59 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 242 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF824TGK 117 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 236 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 304 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 288 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 153 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 510 bp overlap
MYB 1 dataset
ChIP SEM GSE117864.MYB.SEM 156 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 126 bp overlap
MYNN 1 dataset
ChIP Hep-G2 ENCSR398TMP.MYNN.Hep-G2 61 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 145 bp overlap
PAX5 3 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 153 bp overlap
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 151 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 124 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 98 bp overlap
POLR2A 1 dataset
ChIP Raji ENCFF613VGX 218 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 386 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 231 bp overlap
RUNX1T1 2 datasets
ChIP CD34 GSE80773.RUNX1T1.CD34 51 bp overlap
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 102 bp overlap
RUNX2 1 dataset
ChIP SaOS-2 GSE76937.RUNX2.SaOS-2 148 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 163 bp overlap
RXRA 1 dataset
ChIP GM12878 ENCSR000BJD.RXRA.GM12878 103 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCFF171OVM 87 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 337 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 298 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 484 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 392 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 166 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 244 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 198 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 123 bp overlap
TEAD4 2 datasets
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 199 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 169 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 83 bp overlap
TP53 2 datasets
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 258 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 197 bp overlap