chr20 : 2,536,033 2,536,583
550 bp 42 TFs 7 linked genes
This 550 bp open chromatin element is linked to 7 target genes and is bound by 42 transcription factors.
Linked Genes
7 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
TMC2 at TSS At TSS Proximity
ZNF343 27.2 kb Distal Multiome
SNRPB 65.5 kb Distal Multiome
NOP56 116.3 kb Distal Multiome
IDH3B 127.9 kb Distal Multiome
EBF4 156.5 kb Distal Multiome
CPXM1 264.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:2,531,033 – 2,541,583
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 60 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 226 bp overlap
BRD4 5 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 247 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 192 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 175 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 54 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 418 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 219 bp overlap
E2F6 2 datasets
ChIP WA01 ENCSR000BSI.E2F6.WA01 175 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 166 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 192 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 167 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 96 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 89 bp overlap
EZH2 4 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 57 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 306 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.EZH2.Karpas-422_CPI360-D8 205 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 414 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 387 bp overlap
ChIP DE DE-FOXA2-2 420 bp overlap
FOXK2 1 dataset
ChIP GM12878 ENCSR861JUQ.FOXK2.GM12878 252 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 435 bp overlap
ChIP DE DE-GATA4-2 452 bp overlap
ChIP foregut GSE117136.GATA4.foregut 303 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 272 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 429 bp overlap
ChIP DE DE-GATA6-2 467 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 475 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 433 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 504 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 493 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 514 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 550 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 353 bp overlap
ChIP foregut GSE117136.GATA6.foregut 351 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 385 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 347 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 219 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 280 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 157 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 190 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 233 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 196 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 251 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 246 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 281 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 365 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 111 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 392 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 305 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 342 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 454 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 336 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 339 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 519 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 65 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 241 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 350 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 123 bp overlap
ChIP breast-organoid GSE113909.TP63.breast-organoid 70 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 433 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 546 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 188 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 230 bp overlap
ZFP64 2 datasets
ChIP HEK293 GSE76494.ZFP64.HEK293 364 bp overlap
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 120 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 150 bp overlap
ChIP K562 ENCFF281INV 234 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 147 bp overlap
ZZZ3 1 dataset
ChIP HepG2 ENCFF784AAE 347 bp overlap