chr19 : 8,314,738 – 8,315,490
752 bp 49 TFs 14 linked genes
This 752 bp open chromatin element is linked to 14 target genes and is bound by 49 transcription factors.
Linked Genes
14 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NDUFA7 5.9 kb Proximal Proximity
ENSG00000167774 5.9 kb Proximal Proximity
RPS28 6.0 kb Proximal Proximity
CD320 6.4 kb Proximal Proximity
KANK3 28.2 kb Distal Multiome
ANGPTL4 49.4 kb Distal Multiome
RAB11B 75.3 kb Distal Multiome
RAB11B-AS1 75.6 kb Distal Multiome
MARCHF2 98.2 kb Distal Multiome
CERS4 105.7 kb Distal Multiome
HNRNPM 129.9 kb Distal Multiome
FBN3 165.5 kb Distal Multiome
ZNF414 199.1 kb Distal Multiome
MYO1F 262.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:8,309,738 – 8,320,490
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ATOH7 2 datasets
Motif DE_60h DE_60h-ATOH7_MA1468.1 10 bp overlap
Motif DE_72h DE_72h-ATOH7_MA1468.1 10 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 184 bp overlap
Crx 2 datasets
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
Dmbx1 2 datasets
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_72h DE_72h-Dmbx1_MA0883.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 283 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 751 bp overlap
ChIP DE DE-FOXA2-2 740 bp overlap
GATA1 1 dataset
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 752 bp overlap
ChIP DE DE-GATA4-2 744 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 752 bp overlap
ChIP DE DE-GATA6-2 747 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 279 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 752 bp overlap
GSC 2 datasets
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 350 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MXI1 3 datasets
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
NEUROG1 2 datasets
Motif DE_60h DE_60h-NEUROG1_MA0623.2 10 bp overlap
Motif DE_72h DE_72h-NEUROG1_MA0623.2 10 bp overlap
NR2F2 1 dataset
ChIP liver ENCFF427MRU 421 bp overlap
OSR1 1 dataset
Motif DE_72h DE_72h-OSR1_MA1542.2 8 bp overlap
OSR2 2 datasets
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
OTX1 2 datasets
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PAX3 2 datasets
Motif DE_60h DE_60h-PAX3_MA0780.1 10 bp overlap
Motif DE_72h DE_72h-PAX3_MA0780.1 10 bp overlap
PHOX2A 2 datasets
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_72h DE_72h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 2 datasets
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_72h DE_72h-PHOX2B_MA0681.3 12 bp overlap
PITX1 2 datasets
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 334 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 66 bp overlap
PROP1 2 datasets
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Motif DE_72h DE_72h-PROP1_MA0715.1 11 bp overlap
Pax7 2 datasets
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Motif DE_72h DE_72h-Pax7_MA0680.3 10 bp overlap
RARA::RXRA 2 datasets
Motif DE_60h DE_60h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_72h DE_72h-RARARXRA_MA0159.1 17 bp overlap
RHOXF1 2 datasets
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
RREB1 1 dataset
Motif DE_72h DE_72h-RREB1_MA0073.2 19 bp overlap
RXRA::VDR 1 dataset
Motif DE_72h DE_72h-RXRAVDR_MA0074.1 15 bp overlap
Runx1 1 dataset
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 319 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 752 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 714 bp overlap
SOX10 1 dataset
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 513 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 748 bp overlap
SOX4 1 dataset
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
Stat2 1 dataset
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
ZBTB17 2 datasets
Motif DE_60h DE_60h-ZBTB17_MA2102.1 8 bp overlap
Motif DE_72h DE_72h-ZBTB17_MA2102.1 8 bp overlap
ZKSCAN3 1 dataset
Motif DE_72h DE_72h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF136 2 datasets
Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap
Motif DE_72h DE_72h-ZNF136_MA1588.1 15 bp overlap
ZNF184 1 dataset
Motif DE_72h DE_72h-ZNF184_MA2120.1 13 bp overlap
ZNF549 1 dataset
Motif DE_72h DE_72h-ZNF549_MA1728.2 8 bp overlap
ZNF652 2 datasets
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap
ZNF766 1 dataset
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
ZNF8 2 datasets
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap
Motif DE_72h DE_72h-ZNF8_MA1718.1 20 bp overlap
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