chr17 : 73,318,653 73,319,222
569 bp 44 TFs 5 linked genes
This 569 bp open chromatin element is linked to 5 target genes and is bound by 44 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
CDC42EP4 6.6 kb Proximal Proximity
C17orf80 86.6 kb Distal Multiome
COG1 126.0 kb Distal Multiome
SSTR2 154.0 kb Distal Multiome
SLC39A11 226.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:73,313,653 – 73,324,222
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 187 bp overlap
BCL11A 11 datasets
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 272 bp overlap
ChIP CD34_Day7_30min GSE104676.BCL11A.CD34_Day7_30min 212 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 136 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 119 bp overlap
ChIP CD34_Day9_15min GSE104676.BCL11A.CD34_Day9_15min 62 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 281 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 101 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 68 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 76 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 103 bp overlap
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 90 bp overlap
BRD2 1 dataset
ChIP K-562 GSE140325.BRD2.K-562 139 bp overlap
BRD4 6 datasets
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 219 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 307 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 418 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 469 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 409 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 356 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 130 bp overlap
CTCF 1 dataset
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 63 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 52 bp overlap
ChIP BLaER1 ENCFF262VBH 64 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 260 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 267 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 236 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 124 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 198 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 99 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 458 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 173 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 226 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 476 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 224 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 161 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 136 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 249 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 523 bp overlap
ChIP foregut GSE117136.GATA4.foregut 341 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 291 bp overlap
ChIP DE DE-GATA6-2 514 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 413 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 490 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 569 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 448 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 520 bp overlap
ChIP foregut GSE117136.GATA6.foregut 435 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 410 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 307 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 403 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 296 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 173 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 260 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 218 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94822.MYCN.Kelly 258 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 173 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 185 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 136 bp overlap
NKX2-1 1 dataset
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 175 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 367 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 210 bp overlap
PRDM14 2 datasets
ChIP NCCIT GSE71675.PRDM14.NCCIT 101 bp overlap
ChIP primordial-germ-cell-like-cell GSE138674.PRDM14.primordial-germ-cell-like-cell 181 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 514 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 506 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 569 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 300 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 356 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 569 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 243 bp overlap
TAL1 6 datasets
ChIP CD34 GSE52924.TAL1.CD34 186 bp overlap
ChIP HSPC-CD34pos GSE93372.TAL1.HSPC-CD34pos 164 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 241 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 167 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 227 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 233 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 154 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 218 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 145 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 255 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 367 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 349 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 225 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 225 bp overlap
VEZF1 1 dataset
ChIP K562 ENCFF053XDV 343 bp overlap
ZBTB33 4 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 181 bp overlap
ChIP K562 ENCFF427SDV 205 bp overlap
ChIP K562 ENCFF427SDV 404 bp overlap
ChIP K562 ENCFF875HLX 114 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 231 bp overlap