chr16 : 55,661,876 – 55,662,119
243 bp 46 TFs 1 linked gene
This 243 bp open chromatin element is linked to SLC6A2 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SLC6A2 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:55,656,876 – 55,667,119
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 123 bp overlap
BRD4 6 datasets
ChIP BE2C GSE80151.BRD4.BE2C 119 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 139 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 159 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 119 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 201 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 199 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 243 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 243 bp overlap
CTCF 6 datasets
ChIP BE2C ENCSR000DQD.CTCF.BE2C 204 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 130 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 174 bp overlap
ChIP SK-N-SH ENCFF731NJX 151 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 177 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 243 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 132 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 187 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 219 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 230 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 125 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 243 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 204 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 243 bp overlap
ChIP SK-N-SH ENCFF764OZD 154 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 243 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 219 bp overlap
ChIP SH-SY5Y ENCFF475HYF 243 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 243 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 125 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 219 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 59 bp overlap
ChIP DE DE-GATA4-1 243 bp overlap
ChIP DE DE-GATA4-2 243 bp overlap
ChIP foregut GSE117136.GATA4.foregut 243 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 243 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 243 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 243 bp overlap
ChIP foregut GSE117136.GATA6.foregut 243 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 228 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 243 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 240 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 243 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 90 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 165 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 160 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 102 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 51 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 243 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 209 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 166 bp overlap
MYCN 8 datasets
ChIP BE2C GSE80151.MYCN.BE2C 171 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 113 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 243 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 243 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 161 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 119 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 197 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 165 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 198 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 98 bp overlap
OLIG2 4 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 175 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 220 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 226 bp overlap
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 230 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 243 bp overlap
RAD21 3 datasets
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 144 bp overlap
ChIP SK-N-SH ENCFF747MAS 220 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 189 bp overlap
RCOR1 3 datasets
ChIP SK-N-SH ENCFF518EXB 192 bp overlap
ChIP SK-N-SH ENCFF518EXB 66 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 231 bp overlap
REST 2 datasets
ChIP SK-N-SH ENCFF861MKH 212 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 149 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 129 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 243 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 242 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 243 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 97 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 243 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 204 bp overlap
SOX2 2 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 153 bp overlap
ChIP TT GSE46837.SOX2.TT 97 bp overlap
TAF1 1 dataset
ChIP K-562 ENCSR000BKS.TAF1.K-562 53 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 177 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 227 bp overlap
ChIP SK-N-SH ENCFF270OWF 118 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 133 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 133 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 193 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 229 bp overlap
TP63 4 datasets
ChIP JHU-029 GSE88859.TP63.JHU-029 213 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 118 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 112 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 70 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 161 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 243 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 243 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 243 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 243 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 97 bp overlap
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