chr1 : 239,765,251 – 239,765,432
181 bp 33 TFs 0 linked genes
This 181 bp open chromatin element has no linked target genes and is bound by 33 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:239,760,251 – 239,770,432
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
BRD4 2 datasets
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 99 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 157 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 144 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 147 bp overlap
CEBPB 1 dataset
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 106 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CTCF 117 datasets
ChIP 22Rv1 ENCFF466OXN 181 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 181 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 181 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 181 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 181 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 166 bp overlap
ChIP C4-2B ENCFF821XVN 181 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 161 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 116 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 114 bp overlap
ChIP GM23338 ENCFF531QOI 181 bp overlap
ChIP GM23338 ENCFF832KWE 181 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 181 bp overlap
ChIP H1 ENCFF764RHO 120 bp overlap
ChIP H9 ENCFF152GTF 181 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 177 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 172 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 156 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 181 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 158 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 181 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 145 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 132 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 181 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 113 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 172 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 77 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 115 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 97 bp overlap
ChIP HEK293 ENCFF498RMM 181 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 170 bp overlap
ChIP HL-60 ENCSR000DUP.CTCF.HL-60 128 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 164 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 66 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 181 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 169 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 147 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 181 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 174 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 160 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 181 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 96 bp overlap
ChIP HepG2 ENCFF194VBQ 181 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 100 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 97 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 130 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 164 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 158 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 181 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 181 bp overlap
ChIP Loucy ENCFF359TVQ 181 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 157 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 149 bp overlap
ChIP MCF-7 ENCFF139NQI 181 bp overlap
ChIP MCF-7 ENCFF414SZG 164 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 163 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 104 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 124 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 81 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 181 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 181 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 181 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 175 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 181 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 181 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 145 bp overlap
ChIP SK-N-SH ENCFF575DMG 181 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 133 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 181 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 181 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 170 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 181 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 109 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 181 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 181 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 152 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 142 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 127 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 163 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 140 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 160 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 181 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 149 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 165 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 178 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 134 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 181 bp overlap
ChIP endodermal cell ENCFF471YCZ 181 bp overlap
ChIP endodermal cell ENCFF471YCZ 70 bp overlap
ChIP endothelial cell ENCFF663LIE 181 bp overlap
ChIP endothelial cell ENCFF663LIE 136 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 181 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 171 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 181 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 168 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 181 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 147 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 160 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 110 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 132 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 169 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 166 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 168 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 116 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 123 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 146 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 181 bp overlap
ChIP mesothelial cell of epicardium ENCFF427RFE 181 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 181 bp overlap
ChIP neural progenitor cell ENCFF420RBO 181 bp overlap
ChIP neural progenitor cell ENCFF581WPG 181 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 181 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 131 bp overlap
ChIP thoracic-aorta ENCSR549TXG.CTCF.thoracic-aorta 181 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 181 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 139 bp overlap
ESRRA 1 dataset
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 181 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 181 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 149 bp overlap
JUN 1 dataset
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
MSANTD3 1 dataset
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 80 bp overlap
MYOD1 1 dataset
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 73 bp overlap
NFYB 1 dataset
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 180 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 122 bp overlap
RORA 1 dataset
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
ZBTB24 2 datasets
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 128 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 165 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
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