chr16 : 19,722,929 19,723,622
693 bp 66 TFs 6 linked genes
This 693 bp open chromatin element is linked to 6 target genes and is bound by 66 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
IQCK 4.6 kb Proximal Proximity
KNOP1 4.8 kb Proximal Proximity
GPRC5B 161.6 kb Distal Multiome+HiCAR
VPS35L 167.5 kb Distal Multiome
CCP110 199.3 kb Distal Multiome
GDE1 201.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:19,717,929 – 19,728,622
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K562 ENCFF492SKF 278 bp overlap
ChIP K562 ENCFF492SKF 477 bp overlap
Alx1 1 dataset
Motif DE_72h DE_72h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_72h DE_72h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_72h DE_72h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_72h DE_72h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_72h DE_72h-BSX_MA0876.2 6 bp overlap
CREBBP 1 dataset
ChIP retina_Hu33 GSE137311.CREBBP.retina_Hu33 270 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 356 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 394 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 440 bp overlap
CTCF 3 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 226 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 390 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 418 bp overlap
DLX1 1 dataset
Motif DE_72h DE_72h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_72h DE_72h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_72h DE_72h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_72h DE_72h-Dlx4_MA0881.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 431 bp overlap
EP400 1 dataset
ChIP K562 ENCFF850OZQ 198 bp overlap
FOXA1 3 datasets
ChIP A-549 ENCSR000BRD.FOXA1.A-549 187 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 130 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 301 bp overlap
FOXA2 7 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 300 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 300 bp overlap
ChIP DE DE-FOXA2-1 526 bp overlap
ChIP DE DE-FOXA2-2 517 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 335 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 316 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 446 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 305 bp overlap
ChIP DE DE-GATA4-1 645 bp overlap
ChIP DE DE-GATA4-2 655 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 212 bp overlap
ChIP foregut GSE117136.GATA4.foregut 377 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 626 bp overlap
ChIP DE DE-GATA6-2 693 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 329 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 373 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 376 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 639 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 432 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 398 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 541 bp overlap
ChIP foregut GSE117136.GATA6.foregut 385 bp overlap
GBX2 1 dataset
Motif DE_72h DE_72h-GBX2_MA0890.2 6 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 311 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 129 bp overlap
HESX1 1 dataset
Motif DE_72h DE_72h-HESX1_MA0894.2 6 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 228 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 194 bp overlap
HOXA7 1 dataset
Motif DE_72h DE_72h-HOXA7_MA1498.3 6 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 310 bp overlap
Hand1 1 dataset
Motif DE_72h DE_72h-Hand1_MA2123.1 9 bp overlap
Hmx3 1 dataset
Motif DE_72h DE_72h-Hmx3_MA0898.2 9 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 312 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 520 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 375 bp overlap
KDM1A 2 datasets
ChIP K562 ENCFF934ZRG 84 bp overlap
ChIP K562 ENCFF934ZRG 297 bp overlap
LBX2 1 dataset
Motif DE_72h DE_72h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_72h DE_72h-LHX2_MA0700.3 6 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 356 bp overlap
MEF2D 3 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 294 bp overlap
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 295 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 456 bp overlap
MSX1 1 dataset
Motif DE_72h DE_72h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_72h DE_72h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_72h DE_72h-Msx3_MA0709.2 6 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 243 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 138 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 362 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 94 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 481 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 352 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 456 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 470 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 496 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 266 bp overlap
Nobox 1 dataset
Motif DE_72h DE_72h-Nobox_MA0125.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 415 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 467 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 286 bp overlap
RAX 1 dataset
Motif DE_72h DE_72h-RAX_MA0718.2 6 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 500 bp overlap
SMAD2 2 datasets
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 171 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 516 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 317 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 352 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 434 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 344 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 159 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 295 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 331 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 432 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 614 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 142 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 335 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 196 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 145 bp overlap
ZMYM3 1 dataset
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 215 bp overlap
ZNF148 2 datasets
ChIP K-562 GSE121133.ZNF148.K-562 197 bp overlap
ChIP K562 ENCFF352SDL 444 bp overlap
ZNF211 1 dataset
Motif DE_72h DE_72h-ZNF211_MA1974.2 10 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 209 bp overlap