chr15 : 73,571,424 73,571,732
308 bp 51 TFs 1 linked gene
This 308 bp open chromatin element is linked to NPTN-IT1 and is bound by 51 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NPTN-IT1 2.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:73,566,424 – 73,576,732
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 171 bp overlap
AR 7 datasets
ChIP LNCaP ERP003503.AR.LNCaP 139 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 127 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 168 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 146 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 128 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 203 bp overlap
ChIP breast_tumor_Male_8 GSE104399.AR.breast_tumor_Male_8 255 bp overlap
ARID1A 3 datasets
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 141 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 308 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 308 bp overlap
ASCL1 5 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 137 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 122 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 158 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 184 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 126 bp overlap
BRD4 1 dataset
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 112 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 238 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 160 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 176 bp overlap
ESR1 18 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 306 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 202 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 128 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 146 bp overlap
ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 260 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 167 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 308 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 294 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 237 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 187 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 237 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 233 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 181 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 216 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 283 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 203 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 308 bp overlap
ChIP breast_tumor_Male_8 GSE104399.ESR1.breast_tumor_Male_8 167 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 228 bp overlap
FOXA1 33 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 271 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 296 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 219 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 175 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 189 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 141 bp overlap
ChIP MCF-7 GSE80808.FOXA1.MCF-7 301 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 195 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 174 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 223 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 185 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 186 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 243 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 195 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 171 bp overlap
ChIP MCF-7_E2_TAM ERP000380.FOXA1.MCF-7_E2_TAM 184 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 193 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 201 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 269 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 292 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 54 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 277 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 198 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 198 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 221 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 151 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 206 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 190 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 273 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 213 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 194 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 91 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 109 bp overlap
FOXA2 12 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 252 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 228 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 261 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 300 bp overlap
ChIP DE DE-FOXA2-1 308 bp overlap
ChIP DE DE-FOXA2-2 308 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 177 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 251 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 308 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 229 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 299 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 200 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 308 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 308 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 308 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 297 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 259 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 308 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 308 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 260 bp overlap
HDAC2 1 dataset
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 175 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 128 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 195 bp overlap
JUN 3 datasets
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 226 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 308 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 308 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 233 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 246 bp overlap
MAX 3 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 144 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 107 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 169 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 228 bp overlap
MYC 2 datasets
ChIP MCF-7 ENCFF542NWJ 301 bp overlap
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 134 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 124 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 209 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 61 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 179 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 234 bp overlap
PGR 3 datasets
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 304 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 226 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 308 bp overlap
POLR2A 1 dataset
ChIP thyroid gland ENCFF979LRR 308 bp overlap
RAD21 2 datasets
ChIP HEC-1-B_FFRR-insertion GSE140868.RAD21.HEC-1-B_FFRR-insertion 63 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 130 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 187 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 273 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 308 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 300 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 144 bp overlap
SMARCA4 2 datasets
ChIP MCF-7_parental GSE123284.SMARCA4.MCF-7_parental 195 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 291 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 308 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 221 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 253 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 127 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 268 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 308 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 296 bp overlap
TEAD4 1 dataset
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 277 bp overlap
TFAP4 3 datasets
ChIP DLD-1 GSE46935.TFAP4.DLD-1 295 bp overlap
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 222 bp overlap
ChIP HepG2 ENCFF932XOY 308 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 214 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 280 bp overlap
ZNF263 5 datasets
ChIP HEK293 ENCFF336CWQ 308 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 146 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 308 bp overlap
ChIP HepG2 ENCFF626SSV 290 bp overlap
ChIP K562 ENCFF640RNA 308 bp overlap
ZNF317 2 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 292 bp overlap
ChIP HepG2 ENCFF018ISP 308 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 76 bp overlap