chr13 : 75,486,108 – 75,486,503
395 bp 39 TFs 1 linked gene
This 395 bp open chromatin element is linked to TBC1D4 and is bound by 39 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TBC1D4 3.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:75,481,108 – 75,491,503
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
AR 1 dataset
ChIP A-375 GSE116189.AR.A-375 204 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 218 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 395 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 121 bp overlap
BRD3 2 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 323 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 82 bp overlap
BRD4 4 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 165 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 275 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 274 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 349 bp overlap
CBFB 1 dataset
ChIP SaOS-2 GSE76937.CBFB.SaOS-2 194 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 184 bp overlap
CTCF 51 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 299 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 291 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 277 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 209 bp overlap
ChIP A549 ENCFF434LUY 245 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 229 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 318 bp overlap
ChIP HCT116 ENCFF003KHP 395 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 106 bp overlap
ChIP HEK293 ENCFF498RMM 204 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 104 bp overlap
ChIP HFFc6 ENCFF005CJI 395 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 138 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 308 bp overlap
ChIP HeLa-S3 ENCFF626XQK 251 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 231 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 132 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 245 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 184 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 203 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 173 bp overlap
ChIP HepG2 ENCFF127KUP 202 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 202 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 154 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 210 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 114 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 170 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 297 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 125 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 262 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 165 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 216 bp overlap
ChIP endodermal cell ENCFF471YCZ 345 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 211 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 157 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 183 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 144 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 242 bp overlap
ChIP keratinocyte ENCFF667ULX 268 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 182 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 165 bp overlap
ChIP myotube ENCFF981UHL 317 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 177 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 179 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 395 bp overlap
ChIP thyroid gland ENCFF204HWS 339 bp overlap
ChIP thyroid gland ENCFF300RYK 302 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 261 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 221 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 361 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 251 bp overlap
ChIP BLaER1 ENCFF364PUR 117 bp overlap
ESR1 1 dataset
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 219 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 63 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 80 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 379 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 372 bp overlap
KMT2B-D 1 dataset
ChIP SW480 GSE115985.KMT2B-D.SW480 197 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 203 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 167 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 341 bp overlap
NFE2L2 3 datasets
ChIP A-549 GSE113497.NFE2L2.A-549 383 bp overlap
ChIP BEAS-2B GSE145834.NFE2L2.BEAS-2B 254 bp overlap
ChIP BEAS-2B_arsenic GSE145834.NFE2L2.BEAS-2B_arsenic 316 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 327 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 233 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 151 bp overlap
PHIP 4 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 395 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 66 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 213 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 325 bp overlap
PRDM10 1 dataset
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 274 bp overlap
RAD21 1 dataset
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 130 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 375 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 352 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 146 bp overlap
SMARCA4 3 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 395 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 218 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 224 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 368 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 74 bp overlap
SP1 1 dataset
ChIP Hep-G2 ENCSR460YAM.SP1.Hep-G2 200 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 239 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 395 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 92 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 133 bp overlap
ZNF311 1 dataset
ChIP K-562 ENCSR388ZRV.ZNF311.K-562 198 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 136 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 172 bp overlap
ZNF747 1 dataset
ChIP HepG2 ENCFF528MQU 384 bp overlap
Huangfu Lab · Publications · Resources · Contact