chr13 : 61,727,809 61,728,100
291 bp 40 TFs 0 linked genes
This 291 bp open chromatin element has no linked target genes and is bound by 40 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:61,722,809 – 61,733,100
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
ARID1A 4 datasets
ChIP 12Z GSE129781.ARID1A.12Z 124 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 72 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 279 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 171 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 97 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 291 bp overlap
BRD2 8 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 268 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801 216 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_MGSK2801_rDNA 216 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 268 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 191 bp overlap
ChIP MDA-MB-231_NTsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_NTsiRNA_JQ1 168 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 109 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 115 bp overlap
BRD4 8 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 291 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 219 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 211 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 211 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 193 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 193 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 159 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 210 bp overlap
BRD9 3 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD9.MDA-MB-231_JQ1 208 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 242 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD9.MDA-MB-231_MGSK2801 291 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 291 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 170 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 291 bp overlap
ChIP neural cell ENCFF442QNK 282 bp overlap
FOS 2 datasets
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 127 bp overlap
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 121 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE46166.FOSL1.BT-549 291 bp overlap
ChIP BT-549 GSE112961.FOSL1.BT-549 275 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 250 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 291 bp overlap
FOXA1 7 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 291 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 231 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 291 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 157 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 199 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 106 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 75 bp overlap
FOXA2 7 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 252 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 291 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 291 bp overlap
ChIP DE DE-FOXA2-1 255 bp overlap
ChIP DE DE-FOXA2-2 198 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 248 bp overlap
ChIP PC-3_GSK GSE148982.FOXA2.PC-3_GSK 192 bp overlap
GATA2 2 datasets
ChIP SK-N-SH ENCFF764OZD 131 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 51 bp overlap
HAND2 2 datasets
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 52 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 83 bp overlap
HIF1A 1 dataset
ChIP RCC10 GSE101063.HIF1A.RCC10 265 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 256 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 291 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 291 bp overlap
ChIP SK-N-SH ENCFF285GEQ 114 bp overlap
JUN 5 datasets
ChIP BT-549 GSE46166.JUN.BT-549 291 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 265 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 264 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 253 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 286 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 139 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 291 bp overlap
MED12 1 dataset
ChIP myometrium_PT967 GSE128230.MED12.myometrium_PT967 70 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 186 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 282 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 258 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 223 bp overlap
ChIP neural cell ENCFF882LXX 279 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 291 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 291 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 275 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 291 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 126 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 291 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 291 bp overlap
SMARCA4 8 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 87 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 190 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 62 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 291 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 291 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 291 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 291 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 213 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 212 bp overlap
STAT3 2 datasets
ChIP HCC70 GSE152203.STAT3.HCC70 216 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 175 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 123 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 217 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 214 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 217 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 94 bp overlap
TWIST1 4 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 216 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 291 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 291 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 216 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 290 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 60 bp overlap