chr12 : 119,090,372 – 119,091,307
935 bp 53 TFs 2 linked genes
This 935 bp open chromatin element is linked to SRRM4 and CCDC60 and is bound by 53 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SRRM4 109.4 kb Distal Multiome
CCDC60 243.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:119,085,372 – 119,096,307
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 106 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
Bcl11B 4 datasets
Motif DE_36h DE_36h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_48h DE_48h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap
Motif DE_72h DE_72h-Bcl11B_MA1989.2 9 bp overlap
CTCF 10 datasets
ChIP BE2C ENCFF757SRF 296 bp overlap
Motif DE_48h DE_48h-CTCF_MA1930.2 33 bp overlap
Motif DE_72h DE_72h-CTCF_MA1930.2 33 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 167 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 314 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 250 bp overlap
ChIP endodermal cell ENCFF471YCZ 149 bp overlap
ChIP myotube ENCFF981UHL 333 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 263 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 213 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 367 bp overlap
ChIP BLaER1 ENCFF274GAT 387 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
EOMES 3 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 363 bp overlap
ESR1 2 datasets
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 202 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 95 bp overlap
ESRRG 2 datasets
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 202 bp overlap
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 358 bp overlap
ETS1 3 datasets
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 263 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 128 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 368 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 183 bp overlap
FOXA1 1 dataset
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 175 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 694 bp overlap
ChIP DE DE-FOXA2-2 508 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 310 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 854 bp overlap
ChIP DE DE-GATA4-2 880 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 467 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 273 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 893 bp overlap
ChIP DE DE-GATA6-2 860 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 481 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 616 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 460 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 923 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 830 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 815 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 62 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 505 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 364 bp overlap
MED1 3 datasets
ChIP G296S GSE85628.MED1.G296S 265 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 265 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 722 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 179 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
Mecom 1 dataset
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 130 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 498 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 568 bp overlap
PBX3 1 dataset
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
Plagl1 2 datasets
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 101 bp overlap
Runx1 4 datasets
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2 4 datasets
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 481 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 935 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 935 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 826 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 356 bp overlap
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 342 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 932 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 801 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 935 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 902 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 260 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 343 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 388 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 314 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 355 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 861 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 207 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 243 bp overlap
TBR1 2 datasets
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 6 datasets
ChIP G296S GSE85628.TBX5.G296S 420 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 420 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 142 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 691 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 449 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 444 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_72h DE_72h-TFAP4FLI1_MA1967.2 14 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
ZNF416 1 dataset
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 229 bp overlap
ZNF768 2 datasets
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
ZNF85 2 datasets
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap
ZNF93 1 dataset
Motif DE_72h DE_72h-ZNF93_MA1721.2 14 bp overlap
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