chr12 : 69,442,870 69,443,305
435 bp 54 TFs 0 linked genes
This 435 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:69,437,870 – 69,448,305
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 435 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 418 bp overlap
ATF3 1 dataset
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 102 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 219 bp overlap
BRD4 5 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 374 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 229 bp overlap
ChIP IMR-90_SENES GSE74238.BRD4.IMR-90_SENES 155 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 435 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 435 bp overlap
BRD9 1 dataset
ChIP Mel270 GSE124720.BRD9.Mel270 264 bp overlap
CHD2 1 dataset
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 181 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 159 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 234 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 67 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 179 bp overlap
EP300 3 datasets
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 163 bp overlap
ChIP pulmonary-artery_endothelial-cell_siCtrl GSE89786.EP300.pulmonary-artery_endothelial-cell_siCtrl 320 bp overlap
ChIP pulmonary-artery_endothelial-cell_siPFKFB3 GSE89786.EP300.pulmonary-artery_endothelial-cell_siPFKFB3 277 bp overlap
EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.EPAS1.PC-3_hypoxia 251 bp overlap
ERG 8 datasets
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 169 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 130 bp overlap
ChIP aortic-endothelial-cell_D19 GSE139377.ERG.aortic-endothelial-cell_D19 159 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 364 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 255 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 335 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 409 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 303 bp overlap
ESR1 2 datasets
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 232 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 319 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 204 bp overlap
FOS 5 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 361 bp overlap
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 147 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 200 bp overlap
ChIP endothelial cell of umbilical vein ENCFF415XBG 127 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVU.FOS.endothelial_umbilical-vein 435 bp overlap
FOSL1 2 datasets
ChIP 143B GSE74230.FOSL1.143B 327 bp overlap
ChIP MG-63-3 GSE74230.FOSL1.MG-63-3 341 bp overlap
FOXA1 4 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 435 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 396 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 364 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 427 bp overlap
FOXA2 8 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 343 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 435 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 366 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 372 bp overlap
ChIP DE DE-FOXA2-1 435 bp overlap
ChIP DE DE-FOXA2-2 435 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 336 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 333 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 288 bp overlap
GATA2 2 datasets
ChIP endothelial cell of umbilical vein ENCFF148NLK 425 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 435 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 421 bp overlap
ChIP DE DE-GATA4-2 435 bp overlap
ChIP foregut GSE117136.GATA4.foregut 404 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 435 bp overlap
ChIP DE DE-GATA6-2 435 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 315 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 324 bp overlap
ChIP foregut GSE117136.GATA6.foregut 343 bp overlap
HIF1A 2 datasets
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 370 bp overlap
ChIP PC-3_hypoxia_siSMAD3 GSE106305.HIF1A.PC-3_hypoxia_siSMAD3 193 bp overlap
JUN 6 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 418 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 428 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 215 bp overlap
ChIP HAEC_oxpapc_4h GSE89970.JUN.HAEC_oxpapc_4h 112 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 270 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 270 bp overlap
JUNB 3 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 413 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 423 bp overlap
ChIP K-562 ENCSR000DJY.JUNB.K-562 206 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 163 bp overlap
MYC 1 dataset
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 101 bp overlap
NKX2-1 1 dataset
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 435 bp overlap
RAD21 1 dataset
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 111 bp overlap
RELA 35 datasets
ChIP HAEC GSE89970.RELA.HAEC 220 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 393 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 431 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 435 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 405 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 232 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 339 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 433 bp overlap
ChIP aortic-endothelial-cell_IL1B_D24 GSE139377.RELA.aortic-endothelial-cell_IL1B_D24 233 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 379 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 338 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 429 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 399 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 417 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 407 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 431 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 432 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 432 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 407 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 435 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 435 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 206 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 200 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 251 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 435 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 388 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 343 bp overlap
SMAD3 5 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 216 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 170 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 435 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 414 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 271 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 96 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 364 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 435 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 266 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 280 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 208 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 133 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 221 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 371 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 313 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 322 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 237 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 248 bp overlap
TFEB 1 dataset
ChIP HUVEC-C GSE88894.TFEB.HUVEC-C 374 bp overlap
ZNF30 1 dataset
ChIP HEK293 GSE76494.ZNF30.HEK293 179 bp overlap