chr12 : 62,798,593 – 62,799,071
478 bp 30 TFs 0 linked genes
This 478 bp open chromatin element has no linked target genes and is bound by 30 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:62,793,593 – 62,804,071
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP H1 ENCFF295GZO 73 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 364 bp overlap
BRD4 4 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 56 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 124 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 478 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 103 bp overlap
CTCF 145 datasets
ChIP 22Rv1 ENCFF466OXN 237 bp overlap
ChIP 22Rv1 ENCFF466OXN 237 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 268 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 365 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 220 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 73 bp overlap
ChIP B cell ENCFF500PZO 73 bp overlap
ChIP B cell ENCFF506FKC 71 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 478 bp overlap
ChIP C4-2B ENCFF821XVN 307 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 369 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 88 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 65 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 267 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 377 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 60 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 141 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 283 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 339 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 273 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 81 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 141 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 108 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 75 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 276 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 55 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 90 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 61 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 466 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 121 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 300 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 206 bp overlap
ChIP HFFc6 ENCFF005CJI 142 bp overlap
ChIP HL-60 ERP008568.CTCF.HL-60 60 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 333 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 396 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 92 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 51 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 59 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 54 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 134 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 56 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 175 bp overlap
ChIP KMS-11 ENCFF853JKX 93 bp overlap
ChIP KMS-11_NSD2-High GSE131651.CTCF.KMS-11_NSD2-High 60 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 142 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 308 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 107 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 183 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 74 bp overlap
ChIP MCF-7 ENCFF198DQX 213 bp overlap
ChIP MCF-7 ENCFF494VXA 213 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 74 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 57 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 233 bp overlap
ChIP MDM_H5N1 GSE103477.CTCF.MDM_H5N1 73 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 149 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 179 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 98 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 110 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 71 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 107 bp overlap
ChIP PC-9 ENCFF539ULB 85 bp overlap
ChIP PC-9 ENCFF539ULB 85 bp overlap
ChIP Panc1 ENCFF056JQX 199 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 100 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 266 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 77 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 229 bp overlap
ChIP RWPE1 ENCFF200GQF 78 bp overlap
ChIP RWPE2 ENCFF911IEE 272 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 96 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 111 bp overlap
ChIP SLK_CTCF-KD GSE138105.CTCF.SLK_CTCF-KD 106 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 141 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 91 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 240 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 112 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 188 bp overlap
ChIP T-47D_NaCl-30min GSE111923.CTCF.T-47D_NaCl-30min 100 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 147 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 445 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 167 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 98 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 88 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 75 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 61 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 106 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 110 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 72 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 94 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 88 bp overlap
ChIP VCaP ENCFF858YQT 175 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 326 bp overlap
ChIP activated B cell ENCFF418DVI 66 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 81 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 142 bp overlap
ChIP brain ENCFF163BBN 131 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 177 bp overlap
ChIP breast_epithelium ENCSR697YIN.CTCF.breast_epithelium 61 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 64 bp overlap
ChIP chondrocyte ENCFF134ORZ 213 bp overlap
ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 266 bp overlap
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 200 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 117 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 114 bp overlap
ChIP colon_transverse ENCSR608WPS.CTCF.colon_transverse 92 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 139 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 136 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 225 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 75 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 60 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 120 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 100 bp overlap
ChIP esophagus_squamous-epithelium ENCSR756URL.CTCF.esophagus_squamous-epithelium 63 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 114 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 83 bp overlap
ChIP gastrocnemius-medialis ENCSR428BKN.CTCF.gastrocnemius-medialis 197 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 187 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 276 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 72 bp overlap
ChIP heart_left-ventricle ENCSR791AYW.CTCF.heart_left-ventricle 146 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 135 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 155 bp overlap
ChIP lung_left_upper-lobe ENCSR964BKO.CTCF.lung_left_upper-lobe 130 bp overlap
ChIP lung_left_upper-lobe ENCSR972LYL.CTCF.lung_left_upper-lobe 116 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 408 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 409 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 187 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 59 bp overlap
ChIP neural cell ENCFF335ADI 63 bp overlap
ChIP neural progenitor cell ENCFF581WPG 82 bp overlap
ChIP neural progenitor cell ENCFF581WPG 82 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 52 bp overlap
ChIP neutrophil ENCSR785YRL.CTCF.neutrophil 111 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 122 bp overlap
ChIP pancreas_body ENCSR572DUJ.CTCF.pancreas_body 67 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 270 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 248 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 80 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 100 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 131 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 172 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 126 bp overlap
ChIP uterus ENCSR798NVH.CTCF.uterus 107 bp overlap
DDX20 1 dataset
ChIP K-562 ENCSR446LAV.DDX20.K-562 154 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 206 bp overlap
FOXA1 1 dataset
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 94 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 72 bp overlap
ChIP DE DE-GATA6-2 53 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 65 bp overlap
MAX 1 dataset
ChIP A549 ENCFF310XGQ 50 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 278 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 54 bp overlap
ONECUT1 2 datasets
ChIP liver ERP002306.ONECUT1.liver 92 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 99 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 124 bp overlap
RAD21 21 datasets
ChIP CHRF28811 ERP008568.RAD21.CHRF28811 51 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 67 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 84 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 478 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 55 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 101 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 274 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 161 bp overlap
ChIP MDM GSE103477.RAD21.MDM 99 bp overlap
ChIP MDM_IFNb GSE103477.RAD21.MDM_IFNb 212 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 202 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 96 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 92 bp overlap
ChIP THP-1_PMA_IFNb-0h GSE103477.RAD21.THP-1_PMA_IFNb-0h 57 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 175 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 121 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 55 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 54 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 120 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 103 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 82 bp overlap
RBM22 2 datasets
ChIP K-562 ENCSR848AOP.RBM22.K-562 154 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 156 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 245 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 120 bp overlap
SMC1 4 datasets
ChIP DKO GSE131606.SMC1.DKO 183 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.SMC1.HAP1_WaplKO-33_SCC4KO 181 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 186 bp overlap
ChIP HCT-116 GSE131606.SMC1.HCT-116 447 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 53 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 53 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 53 bp overlap
ChIP HeLa-Kyoto_WT GSE138405.SMC3.HeLa-Kyoto_WT 50 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 133 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 259 bp overlap
SPI1 1 dataset
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 172 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 52 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 51 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 359 bp overlap
STAT3 1 dataset
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 137 bp overlap
STAT5B 1 dataset
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 60 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 176 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZNF485 1 dataset
ChIP HEK293T GSE78099.ZNF485.HEK293T 277 bp overlap
ZNF654 1 dataset
ChIP HEK293 ENCSR504VDV.ZNF654.HEK293 94 bp overlap
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