chr12 : 59,357,922 – 59,358,184
262 bp 54 TFs 0 linked genes
This 262 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:59,352,922 – 59,363,184
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 262 bp overlap
ARID2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 262 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 141 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 262 bp overlap
BRD4 2 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 182 bp overlap
ChIP hESC GSE33281.BRD4.hESC 120 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 262 bp overlap
EOMES 1 dataset
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 262 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 136 bp overlap
FOXO1::ELK3 1 dataset
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 262 bp overlap
GLIS2 1 dataset
ChIP HCT-116_5FU GSE125927.GLIS2.HCT-116_5FU 250 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 190 bp overlap
IKZF1 1 dataset
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
JUND 1 dataset
ChIP Kasumi-1_RUNX1-KO GSE117105.JUND.Kasumi-1_RUNX1-KO 151 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MGA::EVX1 1 dataset
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 175 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 180 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 225 bp overlap
RELA 1 dataset
ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 154 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 177 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 233 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 137 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 197 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 176 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 186 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 232 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Six3 1 dataset
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 71 bp overlap
TBP 2 datasets
ChIP hESC_10h GSE122298.TBP.hESC_10h 191 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 195 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TEAD1 2 datasets
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 262 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 234 bp overlap
TP53 68 datasets
ChIP A-498_2h_4GY GSE100292.TP53.A-498_2h_4GY 262 bp overlap
ChIP BC-3_NUT ERP014035.TP53.BC-3_NUT 170 bp overlap
Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap
ChIP GM00011 GSE55727.TP53.GM00011 262 bp overlap
ChIP GM06170 GSE55727.TP53.GM06170 262 bp overlap
ChIP H9 GSE39912.TP53.H9 104 bp overlap
ChIP H9_IFI16 GSE142050.TP53.H9_IFI16 262 bp overlap
ChIP H9_ectoderm_IFI16 GSE142050.TP53.H9_ectoderm_IFI16 262 bp overlap
ChIP H9_mesoderm_IFI16 GSE142050.TP53.H9_mesoderm_IFI16 262 bp overlap
ChIP HCT-116 GSE58506.TP53.HCT-116 218 bp overlap
ChIP HCT-116_2h_4GY GSE100292.TP53.HCT-116_2h_4GY 213 bp overlap
ChIP HCT-116_5FU GSE125927.TP53.HCT-116_5FU 262 bp overlap
ChIP HCT-116_5FU GSE58506.TP53.HCT-116_5FU 243 bp overlap
ChIP HCT-116_5FU-SC GSE125927.TP53.HCT-116_5FU-SC 259 bp overlap
ChIP HCT-116_DMSO GSE125927.TP53.HCT-116_DMSO 220 bp overlap
ChIP HCT-116_DMSO_KOATF3 GSE74355.TP53.HCT-116_DMSO_KOATF3 262 bp overlap
ChIP HCT-116_Negative-ctrl GSE113338.TP53.HCT-116_Negative-ctrl 262 bp overlap
ChIP HCT-116_Nutlin3a GSE125927.TP53.HCT-116_Nutlin3a 262 bp overlap
ChIP HCT-116_Nutlin3a-SC GSE125927.TP53.HCT-116_Nutlin3a-SC 262 bp overlap
ChIP HCT-116_nutlin GSE86164.TP53.HCT-116_nutlin 262 bp overlap
ChIP HCT-116_si-iASSP GSE113338.TP53.HCT-116_si-iASSP 262 bp overlap
ChIP HCT-116_siCtrl-5FU GSE125927.TP53.HCT-116_siCtrl-5FU 262 bp overlap
ChIP HCT-116_siGLIS2-1-5FU GSE125927.TP53.HCT-116_siGLIS2-1-5FU 262 bp overlap
ChIP HCT-116_siGLIS2-1-DMSO GSE125927.TP53.HCT-116_siGLIS2-1-DMSO 231 bp overlap
ChIP HepG2 ENCFF687JDU 262 bp overlap
ChIP IMR-90 GSE115940.TP53.IMR-90 262 bp overlap
ChIP IMR-90 GSE31558.TP53.IMR-90 214 bp overlap
ChIP IMR-90_DMSO GSE58740.TP53.IMR-90_DMSO 179 bp overlap
ChIP IMR-90_NUT3A GSE58740.TP53.IMR-90_NUT3A 262 bp overlap
ChIP IMR-90_SENES_SHLUC GSE42728.TP53.IMR-90_SENES_SHLUC 103 bp overlap
ChIP K-562_Daunorubicin GSE131484.TP53.K-562_Daunorubicin 247 bp overlap
ChIP LOX-IMVI_2h_4GY GSE100292.TP53.LOX-IMVI_2h_4GY 235 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP53.MCF-10A_Nutlin3A 262 bp overlap
ChIP MCF-7_1h_IR_10Gy GSE100099.TP53.MCF-7_1h_IR_10Gy 262 bp overlap
ChIP MCF-7_2-5h_IR_10Gy GSE100099.TP53.MCF-7_2-5h_IR_10Gy 262 bp overlap
ChIP MCF-7_4h_IR_10Gy GSE100099.TP53.MCF-7_4h_IR_10Gy 262 bp overlap
ChIP MCF-7_7-5h_IR_10Gy GSE100099.TP53.MCF-7_7-5h_IR_10Gy 262 bp overlap
ChIP MCF-7_7-5h_IR_10Gy_Nutlin GSE100099.TP53.MCF-7_7-5h_IR_10Gy_Nutlin 262 bp overlap
ChIP MCF-7_NCS-treated GSE101737.TP53.MCF-7_NCS-treated 262 bp overlap
ChIP MCF-7_minus_Decitabine GSE100292.TP53.MCF-7_minus_Decitabine 220 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 262 bp overlap
ChIP MCF-7_plus_Decitabine GSE100292.TP53.MCF-7_plus_Decitabine 227 bp overlap
ChIP NCI-H460_2h_4GY GSE100292.TP53.NCI-H460_2h_4GY 226 bp overlap
ChIP SJSA-1_nutlin GSE86164.TP53.SJSA-1_nutlin 262 bp overlap
ChIP SaOS-2 GSE15780.TP53.SaOS-2 262 bp overlap
ChIP U2OS_ACTD GSE21939.TP53.U2OS_ACTD 262 bp overlap
ChIP U2OS_DMSO GSE46641.TP53.U2OS_DMSO 262 bp overlap
ChIP U2OS_DXR GSE46641.TP53.U2OS_DXR 131 bp overlap
ChIP U2OS_ETO GSE21939.TP53.U2OS_ETO 262 bp overlap
ChIP U2OS_NUT GSE46641.TP53.U2OS_NUT 262 bp overlap
ChIP U2OS_UV_16H ERP004176.TP53.U2OS_UV_16H 179 bp overlap
ChIP U2OS_UV_8H ERP004176.TP53.U2OS_UV_8H 235 bp overlap
ChIP UACC-257_2h_4GY GSE100292.TP53.UACC-257_2h_4GY 186 bp overlap
ChIP UO-31_2h_4GY GSE100292.TP53.UO-31_2h_4GY 262 bp overlap
ChIP WTC11 ENCFF359JCU 262 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 262 bp overlap
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 262 bp overlap
ChIP keratinocyte GSE56674.TP53.keratinocyte 262 bp overlap
ChIP keratinocyte_ADRIA GSE56674.TP53.keratinocyte_ADRIA 184 bp overlap
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 262 bp overlap
ChIP lymphocyte_104_Nutlin GSE110368.TP53.lymphocyte_104_Nutlin 262 bp overlap
ChIP lymphocyte_116 GSE110368.TP53.lymphocyte_116 250 bp overlap
ChIP lymphocyte_116_DXR GSE110368.TP53.lymphocyte_116_DXR 262 bp overlap
ChIP lymphocyte_116_Nutlin GSE110368.TP53.lymphocyte_116_Nutlin 262 bp overlap
ChIP lymphocyte_45_DXR GSE110368.TP53.lymphocyte_45_DXR 228 bp overlap
ChIP lymphocyte_45_Nutlin GSE110368.TP53.lymphocyte_45_Nutlin 148 bp overlap
ChIP lymphocyte_90_DXR GSE110368.TP53.lymphocyte_90_DXR 161 bp overlap
ChIP lymphocyte_90_Nutlin GSE110368.TP53.lymphocyte_90_Nutlin 262 bp overlap
TP63 11 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 73 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 138 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 190 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 153 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 163 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 192 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 193 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 171 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 174 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 125 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 262 bp overlap
TP73 1 dataset
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
TP73_DELTANP 1 dataset
ChIP SaOS-2 GSE15780.TP73_DELTANP.SaOS-2 155 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 149 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF263 1 dataset
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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