chr12 : 25,885,468 – 25,886,346

878 bp 64 TFs 1 linked gene

This 878 bp open chromatin element is linked to ENSG00000256256 and is bound by 64 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000256256		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

64 transcription factors

BCOR 1 dataset

ChIP WA01 GSE104690.BCOR.WA01 182 bp overlap

BRD2 1 dataset

ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 242 bp overlap

BRD4 2 datasets

ChIP 22Rv1_DHT-ABBV-744 GSE118247.BRD4.22Rv1_DHT-ABBV-744 97 bp overlap

ChIP HAP1 GSE108387.BRD4.HAP1 348 bp overlap

CEBPA 1 dataset

ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 177 bp overlap

CEBPB 1 dataset

ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 164 bp overlap

CEBPG 1 dataset

ChIP K-562 ENCSR620VIC.CEBPG.K-562 59 bp overlap

CTCF 2 datasets

ChIP GSC23 GSE139416.CTCF.GSC23 306 bp overlap

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 230 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF093OYK 199 bp overlap

ChIP BLaER1 ENCFF262VBH 251 bp overlap

Crx 1 dataset

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

EGR3 1 dataset

Motif DE_72h DE_72h-EGR3_MA0732.2 11 bp overlap

ESR1 4 datasets

ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 434 bp overlap

ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 205 bp overlap

ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 214 bp overlap

ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 226 bp overlap

FOSL2 1 dataset

Motif DE_72h DE_72h-FOSL2_MA0478.2 10 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 504 bp overlap

ChIP DE DE-FOXA2-2 486 bp overlap

GATA2 6 datasets

ChIP ESF GSE108408.GATA2.ESF 109 bp overlap

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 219 bp overlap

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 261 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 208 bp overlap

ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 79 bp overlap

ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 210 bp overlap

GATA4 5 datasets

ChIP DE DE-GATA4-1 654 bp overlap

ChIP DE DE-GATA4-2 636 bp overlap

ChIP foregut GSE117136.GATA4.foregut 366 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 242 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 319 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 340 bp overlap

ChIP DE DE-GATA6-2 607 bp overlap

Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 626 bp overlap

ChIP foregut GSE117136.GATA6.foregut 393 bp overlap

GSC 1 dataset

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

Gata3 1 dataset

Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap

HIVEP1 1 dataset

ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 190 bp overlap

Hnf1A 2 datasets

Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap

KDM1A 2 datasets

ChIP K-562 GSE117944.KDM1A.K-562 172 bp overlap

ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 186 bp overlap

MYOD1 1 dataset

ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 228 bp overlap

NANOG 8 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 146 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 376 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 169 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 273 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 290 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 321 bp overlap

ChIP hESC GSE20650.NANOG.hESC 152 bp overlap

ChIP hESC GSE18292.NANOG.hESC 94 bp overlap

OTX1 1 dataset

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 260 bp overlap

PITX1 1 dataset

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 289 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 367 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap

RHOXF1 1 dataset

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 349 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 277 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 258 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap

SOX10 1 dataset

Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 372 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 795 bp overlap

SOX2 3 datasets

ChIP HCC95 GSE137459.SOX2.HCC95 204 bp overlap

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 351 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 284 bp overlap

SOX4 1 dataset

Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap

SP1 1 dataset

ChIP WTC11 ENCFF688PEU 501 bp overlap

STAT1 1 dataset

Motif DE_72h DE_72h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif DE_72h DE_72h-STAT3_MA0144.3 9 bp overlap

Sox11 1 dataset

Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap

Sox17 2 datasets

Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap

Sox5 1 dataset

Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap

Sox6 1 dataset

Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap

Sox7 2 datasets

Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap

Stat4 1 dataset

Motif DE_72h DE_72h-Stat4_MA0518.2 10 bp overlap

Stat5a 1 dataset

Motif DE_72h DE_72h-Stat5a_MA1624.2 9 bp overlap

Stat5a::Stat5b 1 dataset

Motif DE_72h DE_72h-Stat5aStat5b_MA0519.2 9 bp overlap

Stat5b 1 dataset

Motif DE_72h DE_72h-Stat5b_MA1625.2 9 bp overlap

TCF7L1 1 dataset

Motif DE_72h DE_72h-TCF7L1_MA1421.1 12 bp overlap

TCF7L2 1 dataset

Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap

TRPS1 1 dataset

Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 148 bp overlap

ZBTB21 2 datasets

ChIP WTC11 ENCFF677ZYY 321 bp overlap

ChIP WTC11 ENCFF677ZYY 401 bp overlap

ZBTB7A 1 dataset

ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 219 bp overlap

ZFP57 1 dataset

ChIP hESC GSE115387.ZFP57.hESC 351 bp overlap

ZNF138 1 dataset

ChIP WTC11 ENCFF800FUU 331 bp overlap

ZNF460 1 dataset

Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap

ZNF680 1 dataset

Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap

ZNF93 1 dataset

Motif DE_72h DE_72h-ZNF93_MA1721.2 14 bp overlap

Zfp809 1 dataset

Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap