chr12 : 24,963,126 24,963,906
780 bp 70 TFs 4 linked genes
This 780 bp open chromatin element is linked to 4 target genes and is bound by 70 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
BCAT1 14.4 kb Distal Multiome
DNAI7 231.6 kb Distal Multiome
ETFRF1 231.7 kb Distal Multiome
KRAS 287.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:24,958,126 – 24,968,906
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
DMRTA1 1 dataset
Motif DE_24h DE_24h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_24h DE_24h-DMRTA2_MA1478.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 239 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 140 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 780 bp overlap
ChIP DE DE-FOXA2-2 780 bp overlap
FOXC1 1 dataset
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXH1 2 datasets
Motif DE_24h DE_24h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 4 datasets
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
Motif DE_24h DE_24h-GATA2_MA0036.4 7 bp overlap
Motif DE_24h DE_24h-GATA2_MA0036.4 7 bp overlap
Motif DE_24h DE_24h-GATA2_MA0036.4 7 bp overlap
GATA4 10 datasets
ChIP DE DE-GATA4-1 780 bp overlap
ChIP DE DE-GATA4-2 780 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 468 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 765 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 151 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 343 bp overlap
GATA5 4 datasets
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 232 bp overlap
ChIP DE DE-GATA6-1 780 bp overlap
ChIP DE DE-GATA6-2 780 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 780 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 780 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 708 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 780 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 780 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 678 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 482 bp overlap
ChIP foregut GSE117136.GATA6.foregut 681 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 380 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 717 bp overlap
Gata3 4 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
Hnf1A 1 dataset
Motif DE_72h DE_72h-Hnf1A_MA1991.2 10 bp overlap
ISL2 5 datasets
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Motif DE_24h DE_24h-ISL2_MA0914.2 6 bp overlap
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
Motif DE_72h DE_72h-ISL2_MA0914.2 6 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 397 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 320 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 591 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 371 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 464 bp overlap
Lef1 1 dataset
Motif DE_72h DE_72h-Lef1_MA0768.3 8 bp overlap
MAF::NFE2 4 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_24h DE_24h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_72h DE_72h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 4 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_24h DE_24h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_72h DE_72h-MAFGNFE2L1_MA0089.3 11 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MYB 3 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Motif DE_24h DE_24h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
MYOD1 1 dataset
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NANOG 4 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 174 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 466 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 134 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 282 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 429 bp overlap
Nfe2l2 4 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_24h DE_24h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_72h DE_72h-Nfe2l2_MA0150.3 11 bp overlap
Nr2e1 2 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif DE_24h DE_24h-Nr2e1_MA0676.1 9 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 265 bp overlap
PKNOX2 1 dataset
Motif DE_24h DE_24h-PKNOX2_MA0783.1 12 bp overlap
POU2F1 2 datasets
Motif DE_24h DE_24h-POU2F1_MA0785.2 9 bp overlap
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F2 2 datasets
Motif DE_24h DE_24h-POU2F2_MA0507.3 13 bp overlap
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_24h DE_24h-POU2F3_MA0627.3 9 bp overlap
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 3 datasets
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
Motif DE_24h DE_24h-POU3F2_MA0787.1 12 bp overlap
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_24h DE_24h-POU3F3_MA0788.1 13 bp overlap
Motif DE_60h DE_60h-POU3F3_MA0788.1 13 bp overlap
POU5F1 3 datasets
Motif DE_24h DE_24h-POU5F1_MA1115.2 7 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 376 bp overlap
POU5F1B 2 datasets
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
Ptf1A 1 dataset
Motif DE_24h DE_24h-Ptf1A_MA1620.2 8 bp overlap
SCRT1 1 dataset
Motif DE_24h DE_24h-SCRT1_MA0743.3 10 bp overlap
SIX2 1 dataset
Motif DE_24h DE_24h-SIX2_MA1119.2 11 bp overlap
SMAD2 9 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 310 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 539 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 339 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 743 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 756 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 780 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 780 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 755 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 732 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 767 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 780 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 306 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 243 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 367 bp overlap
SNAI2 1 dataset
Motif DE_24h DE_24h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_24h DE_24h-SNAI3_MA1559.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 357 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 548 bp overlap
Six3 1 dataset
Motif DE_24h DE_24h-Six3_MA0631.2 11 bp overlap
Stat5a::Stat5b 4 datasets
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_24h DE_24h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_24h DE_24h-Stat5aStat5b_MA0519.2 9 bp overlap
TBX5 2 datasets
Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF4 1 dataset
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TCF7 1 dataset
Motif DE_72h DE_72h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_72h DE_72h-TCF7L2_MA0523.2 9 bp overlap
TGIF1 1 dataset
Motif DE_24h DE_24h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_24h DE_24h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_24h DE_24h-TGIF2LX_MA1571.1 12 bp overlap
TRPS1 4 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
ZBTB12 4 datasets
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
Motif DE_24h DE_24h-ZBTB12_MA1649.2 7 bp overlap
Motif DE_24h DE_24h-ZBTB12_MA1649.2 7 bp overlap
ZBTB6 4 datasets
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_24h DE_24h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_60h DE_60h-ZBTB6_MA1581.2 9 bp overlap
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF175 2 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap
ZNF354C 2 datasets
Motif DE_24h DE_24h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 504 bp overlap
ZNF558 3 datasets
Motif DE_24h DE_24h-ZNF558_MA2335.1 29 bp overlap
Motif DE_24h DE_24h-ZNF558_MA2335.1 29 bp overlap
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif DE_24h DE_24h-ZNF768_MA1731.2 9 bp overlap