chr1 : 192,991,840 – 192,992,544

704 bp 72 TFs 0 linked genes

This 704 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

72 transcription factors

Ascl2 1 dataset

Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap

BHLHE22 1 dataset

Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap

CEBPA 2 datasets

Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap

Motif DE_72h DE_72h-CEBPA_MA0102.5 10 bp overlap

CEBPB 1 dataset

ChIP MV4-11 GSE88746.CEBPB.MV4-11 204 bp overlap

CEBPD 2 datasets

Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap

Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap

Cebpa 4 datasets

ChIP BLaER1 ENCFF031ISE 125 bp overlap

ChIP BLaER1 ENCFF335XTP 171 bp overlap

ChIP BLaER1 ENCFF364PUR 251 bp overlap

ChIP BLaER1 ENCFF460KDD 287 bp overlap

Crx 2 datasets

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap

DUX4 2 datasets

Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap

Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap

ESR2 1 dataset

Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap

ESRRA 1 dataset

Motif DE_72h DE_72h-ESRRA_MA0592.4 9 bp overlap

ESRRB 1 dataset

Motif DE_72h DE_72h-ESRRB_MA0141.4 10 bp overlap

Esrrg 1 dataset

Motif DE_72h DE_72h-Esrrg_MA0643.2 9 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 615 bp overlap

ChIP DE DE-FOXA2-2 607 bp overlap

FOXH1 2 datasets

Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap

Motif DE_72h DE_72h-FOXH1_MA0479.2 8 bp overlap

FOXN3 2 datasets

Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap

Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap

GATA2 1 dataset

Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap

GATA4 5 datasets

ChIP DE DE-GATA4-1 533 bp overlap

ChIP DE DE-GATA4-2 634 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 277 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 398 bp overlap

GATA6 5 datasets

ChIP DE DE-GATA6-1 618 bp overlap

ChIP DE DE-GATA6-2 665 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 306 bp overlap

GFI1 1 dataset

Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap

GSC 2 datasets

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap

Gata3 1 dataset

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

Gfi1B 1 dataset

Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap

IKZF1 3 datasets

Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap

Motif DE_72h DE_72h-IKZF1_MA1508.2 8 bp overlap

ChIP K-562 ENCSR395HWC.IKZF1.K-562 252 bp overlap

MSC 2 datasets

Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap

Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap

MYNN 1 dataset

ChIP K-562 ENCSR737LTZ.MYNN.K-562 186 bp overlap

MYOG 1 dataset

Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap

NANOG 1 dataset

ChIP WA01 ENCSR000BMT.NANOG.WA01 122 bp overlap

NFYA 2 datasets

Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap

Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap

NFYC 2 datasets

Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap

Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap

NR2C1 1 dataset

Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap

NR2F2 1 dataset

Motif DE_72h DE_72h-NR2F2_MA1111.2 7 bp overlap

NR4A1 1 dataset

Motif DE_72h DE_72h-NR4A1_MA1112.3 8 bp overlap

NR4A2 1 dataset

Motif DE_72h DE_72h-NR4A2_MA0160.3 8 bp overlap

Nanog 2 datasets

Motif DE_60h DE_60h-Nanog_MA2339.1 7 bp overlap

Motif DE_72h DE_72h-Nanog_MA2339.1 7 bp overlap

Neurod2 1 dataset

Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap

Nr1H2 1 dataset

Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap

OTX1 2 datasets

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap

Motif DE_72h DE_72h-OTX2_MA0712.3 7 bp overlap

Olig2 1 dataset

Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap

PITX1 2 datasets

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap

PITX3 2 datasets

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap

Ppara 1 dataset

Motif DE_72h DE_72h-Ppara_MA2338.1 7 bp overlap

RHOXF1 2 datasets

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap

RORA 2 datasets

Motif DE_72h DE_72h-RORA_MA0071.1 10 bp overlap

Motif DE_72h DE_72h-RORA_MA0072.2 11 bp overlap

RORB 1 dataset

Motif DE_72h DE_72h-RORB_MA1150.2 10 bp overlap

RPA2_phospho 1 dataset

ChIP HeLa GSE108172.RPA2_phospho.HeLa 185 bp overlap

Rarg 1 dataset

Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap

Rhox11 2 datasets

Motif DE_60h DE_60h-Rhox11_MA0629.2 9 bp overlap

Motif DE_72h DE_72h-Rhox11_MA0629.2 9 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 203 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 466 bp overlap

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 73 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 170 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 297 bp overlap

STAT1 2 datasets

Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap

Motif DE_72h DE_72h-STAT1_MA0137.4 9 bp overlap

SUPT5H 1 dataset

ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 89 bp overlap

Stat4 2 datasets

Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap

Motif DE_72h DE_72h-Stat4_MA0518.2 10 bp overlap

TAL1 1 dataset

ChIP K-562 ENCSR106FRG.TAL1.K-562 245 bp overlap

TEAD1 2 datasets

Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap

Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap

TEAD3 2 datasets

Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap

Motif DE_72h DE_72h-TEAD3_MA0808.1 8 bp overlap

TEAD4 2 datasets

Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap

Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap

TRPS1 1 dataset

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

Tcf12 1 dataset

Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap

Vdr 1 dataset

Motif DE_60h DE_60h-Vdr_MA0693.4 7 bp overlap

ZKSCAN1 2 datasets

Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap

Motif DE_72h DE_72h-ZKSCAN1_MA1585.2 9 bp overlap

ZNF528 1 dataset

ChIP HEK293 GSE76494.ZNF528.HEK293 227 bp overlap

ZNF85 2 datasets

Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap

Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap