chr10 : 16,558,869 – 16,559,824
955 bp 57 TFs 3 linked genes
This 955 bp open chromatin element is linked to PTER, RSU1, and MINDY3 and is bound by 57 transcription factors.
Linked Genes
3 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PTER 122.3 kb Distal Multiome
RSU1 258.1 kb Distal Multiome
MINDY3 698.8 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:16,553,869 – 16,564,824
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_72h DE_72h-AhrArnt_MA0006.2 5 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 425 bp overlap
CTCF 2 datasets
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
Motif DE_72h DE_72h-CTCF_MA0139.2 15 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
EBF1 1 dataset
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
EBF3 3 datasets
Motif DE_48h DE_48h-EBF3_MA1637.2 9 bp overlap
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
Motif DE_72h DE_72h-EBF3_MA1637.2 9 bp overlap
Ebf2 3 datasets
Motif DE_48h DE_48h-Ebf2_MA1604.2 9 bp overlap
Motif DE_60h DE_60h-Ebf2_MA1604.2 9 bp overlap
Motif DE_72h DE_72h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FIGLA 5 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 353 bp overlap
ChIP DE DE-FOXA2-2 451 bp overlap
FOXN3 3 datasets
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
GATA1::TAL1 3 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 706 bp overlap
ChIP DE DE-GATA4-2 673 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 483 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 577 bp overlap
ChIP DE DE-GATA6-2 917 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 572 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 340 bp overlap
ChIP foregut GSE117136.GATA6.foregut 532 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 437 bp overlap
HAND2 3 datasets
ChIP Kelly GSE94822.HAND2.Kelly 144 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 258 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 216 bp overlap
HNF4A 3 datasets
Motif DE_48h DE_48h-HNF4A_MA0114.5 9 bp overlap
Motif DE_60h DE_60h-HNF4A_MA0114.5 9 bp overlap
Motif DE_72h DE_72h-HNF4A_MA0114.5 9 bp overlap
HNF4G 3 datasets
Motif DE_48h DE_48h-HNF4G_MA0484.3 9 bp overlap
Motif DE_60h DE_60h-HNF4G_MA0484.3 9 bp overlap
Motif DE_72h DE_72h-HNF4G_MA0484.3 9 bp overlap
Hic1 3 datasets
Motif DE_48h DE_48h-Hic1_MA0739.2 8 bp overlap
Motif DE_60h DE_60h-Hic1_MA0739.2 8 bp overlap
Motif DE_72h DE_72h-Hic1_MA0739.2 8 bp overlap
KLF13 2 datasets
Motif DE_60h DE_60h-KLF13_MA0657.2 17 bp overlap
Motif DE_72h DE_72h-KLF13_MA0657.2 17 bp overlap
MGA::EVX1 6 datasets
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_72h DE_72h-MGAEVX1_MA1960.2 11 bp overlap
MYB 3 datasets
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 146 bp overlap
MZF1 2 datasets
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
NFYB 1 dataset
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
NKX2-2 2 datasets
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
Motif DE_72h DE_72h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
Motif DE_72h DE_72h-NKX2-5_MA0063.3 7 bp overlap
NR1H2::RXRA 3 datasets
Motif DE_48h DE_48h-NR1H2RXRA_MA0115.1 17 bp overlap
Motif DE_60h DE_60h-NR1H2RXRA_MA0115.1 17 bp overlap
Motif DE_72h DE_72h-NR1H2RXRA_MA0115.1 17 bp overlap
NR4A1 3 datasets
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
Motif DE_72h DE_72h-NR4A1_MA1112.3 8 bp overlap
NR4A2 3 datasets
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Motif DE_72h DE_72h-NR4A2_MA0160.3 8 bp overlap
NR6A1 3 datasets
Motif DE_48h DE_48h-NR6A1_MA1541.2 14 bp overlap
Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap
Motif DE_72h DE_72h-NR6A1_MA1541.2 14 bp overlap
OTX2 1 dataset
Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap
PLAGL2 2 datasets
Motif DE_60h DE_60h-PLAGL2_MA1548.2 8 bp overlap
Motif DE_72h DE_72h-PLAGL2_MA1548.2 8 bp overlap
Pparg::Rxra 3 datasets
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_72h DE_72h-PpargRxra_MA0065.3 13 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Rarg 3 datasets
Motif DE_48h DE_48h-Rarg_MA0860.1 17 bp overlap
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap
Runx1 2 datasets
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 704 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 560 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 449 bp overlap
SOX10 3 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 332 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 397 bp overlap
SOX4 3 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SP3 2 datasets
Motif DE_60h DE_60h-SP3_MA0746.3 11 bp overlap
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
SREBF1 3 datasets
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
Motif DE_60h DE_60h-SREBF1_MA0829.3 10 bp overlap
Motif DE_72h DE_72h-SREBF1_MA0829.3 10 bp overlap
Sox6 3 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
TFAP2A 2 datasets
Motif DE_60h DE_60h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_72h DE_72h-TFAP2A_MA0810.2 11 bp overlap
THRB 3 datasets
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
Motif DE_72h DE_72h-THRB_MA1576.2 18 bp overlap
ZEB1 5 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF135 3 datasets
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF281 2 datasets
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF449 2 datasets
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
Motif DE_72h DE_72h-ZNF449_MA1656.2 10 bp overlap
ZNF652 3 datasets
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
Motif DE_72h DE_72h-ZNF652_MA1657.2 9 bp overlap
ZNF682 2 datasets
Motif DE_60h DE_60h-ZNF682_MA1599.2 11 bp overlap
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap
ZNF707 3 datasets
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
ZNF708 2 datasets
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
Zfp809 1 dataset
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Zic2 2 datasets
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
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