chr9 : 108,590,837 – 108,591,903
1,066 bp 83 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 83 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:108,585,837 – 108,596,903
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
83 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
CEBPG 3 datasets
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
Motif DE_72h DE_72h-CEBPG_MA1636.2 10 bp overlap
CUX1 1 dataset
Motif DE_60h DE_60h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_60h DE_60h-CUX2_MA0755.2 9 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 56 bp overlap
DMRTA2 1 dataset
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Dmrt1 3 datasets
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_72h DE_72h-Dmrt1_MA1603.2 9 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 397 bp overlap
ETV5::FOXI1 3 datasets
Motif DE_48h DE_48h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif DE_60h DE_60h-ETV5FOXI1_MA1946.2 12 bp overlap
Motif DE_72h DE_72h-ETV5FOXI1_MA1946.2 12 bp overlap
ETV5::FOXO1 3 datasets
Motif DE_48h DE_48h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_60h DE_60h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif DE_72h DE_72h-ETV5FOXO1_MA1947.2 10 bp overlap
FEZF2 4 datasets
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOXA1 5 datasets
Motif DE_48h DE_48h-FOXA1_MA0148.5 8 bp overlap
Motif DE_60h DE_60h-FOXA1_MA0148.5 8 bp overlap
Motif DE_72h DE_72h-FOXA1_MA0148.5 8 bp overlap
ChIP T47D-A1-2_Dex GSE112491.FOXA1.T47D-A1-2_Dex 132 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 250 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP DE DE-FOXA2-1 1066 bp overlap
ChIP DE DE-FOXA2-2 1066 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
Motif DE_72h DE_72h-FOXA2_MA0047.4 8 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 186 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 226 bp overlap
FOXA3 3 datasets
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
Motif DE_60h DE_60h-FOXA3_MA1683.2 7 bp overlap
Motif DE_72h DE_72h-FOXA3_MA1683.2 7 bp overlap
FOXB1 3 datasets
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
Motif DE_72h DE_72h-FOXB1_MA0845.1 11 bp overlap
FOXC1 3 datasets
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
Motif DE_72h DE_72h-FOXC1_MA0032.2 11 bp overlap
FOXC2 3 datasets
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
Motif DE_72h DE_72h-FOXC2_MA0846.2 11 bp overlap
FOXD1 3 datasets
Motif DE_48h DE_48h-FOXD1_MA0031.2 7 bp overlap
Motif DE_60h DE_60h-FOXD1_MA0031.2 7 bp overlap
Motif DE_72h DE_72h-FOXD1_MA0031.2 7 bp overlap
FOXD2 3 datasets
Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
Motif DE_72h DE_72h-FOXD2_MA0847.4 11 bp overlap
FOXE1 3 datasets
Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
Motif DE_72h DE_72h-FOXE1_MA1487.3 12 bp overlap
FOXG1 3 datasets
Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap
Motif DE_60h DE_60h-FOXG1_MA0613.1 8 bp overlap
Motif DE_72h DE_72h-FOXG1_MA0613.1 8 bp overlap
FOXI1 3 datasets
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
Motif DE_60h DE_60h-FOXI1_MA0042.2 7 bp overlap
Motif DE_72h DE_72h-FOXI1_MA0042.2 7 bp overlap
FOXK1 3 datasets
Motif DE_48h DE_48h-FOXK1_MA0852.3 7 bp overlap
Motif DE_60h DE_60h-FOXK1_MA0852.3 7 bp overlap
Motif DE_72h DE_72h-FOXK1_MA0852.3 7 bp overlap
FOXK2 3 datasets
Motif DE_48h DE_48h-FOXK2_MA1103.3 7 bp overlap
Motif DE_60h DE_60h-FOXK2_MA1103.3 7 bp overlap
Motif DE_72h DE_72h-FOXK2_MA1103.3 7 bp overlap
FOXL1 3 datasets
Motif DE_48h DE_48h-FOXL1_MA0033.2 7 bp overlap
Motif DE_60h DE_60h-FOXL1_MA0033.2 7 bp overlap
Motif DE_72h DE_72h-FOXL1_MA0033.2 7 bp overlap
FOXN3 1 dataset
Motif DE_60h DE_60h-FOXN3_MA1489.1 8 bp overlap
FOXO1::ELK3 3 datasets
Motif DE_48h DE_48h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXO1::FLI1 3 datasets
Motif DE_48h DE_48h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap
Motif DE_72h DE_72h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXO4 3 datasets
Motif DE_48h DE_48h-FOXO4_MA0848.1 7 bp overlap
Motif DE_60h DE_60h-FOXO4_MA0848.1 7 bp overlap
Motif DE_72h DE_72h-FOXO4_MA0848.1 7 bp overlap
FOXO6 3 datasets
Motif DE_48h DE_48h-FOXO6_MA0849.1 7 bp overlap
Motif DE_60h DE_60h-FOXO6_MA0849.1 7 bp overlap
Motif DE_72h DE_72h-FOXO6_MA0849.1 7 bp overlap
FOXP1 3 datasets
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
Motif DE_60h DE_60h-FOXP1_MA0481.4 7 bp overlap
Motif DE_72h DE_72h-FOXP1_MA0481.4 7 bp overlap
FOXP2 3 datasets
Motif DE_48h DE_48h-FOXP2_MA0593.2 9 bp overlap
Motif DE_60h DE_60h-FOXP2_MA0593.2 9 bp overlap
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
FOXP3 3 datasets
Motif DE_48h DE_48h-FOXP3_MA0850.1 7 bp overlap
Motif DE_60h DE_60h-FOXP3_MA0850.1 7 bp overlap
Motif DE_72h DE_72h-FOXP3_MA0850.1 7 bp overlap
FOXP4 3 datasets
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
Motif DE_60h DE_60h-FOXP4_MA2117.1 7 bp overlap
Motif DE_72h DE_72h-FOXP4_MA2117.1 7 bp overlap
FOXS1 3 datasets
Motif DE_48h DE_48h-FOXS1_MA2118.1 8 bp overlap
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
Motif DE_72h DE_72h-FOXS1_MA2118.1 8 bp overlap
Foxf1 3 datasets
Motif DE_48h DE_48h-Foxf1_MA1606.2 7 bp overlap
Motif DE_60h DE_60h-Foxf1_MA1606.2 7 bp overlap
Motif DE_72h DE_72h-Foxf1_MA1606.2 7 bp overlap
Foxj2 3 datasets
Motif DE_48h DE_48h-Foxj2_MA0614.1 8 bp overlap
Motif DE_60h DE_60h-Foxj2_MA0614.1 8 bp overlap
Motif DE_72h DE_72h-Foxj2_MA0614.1 8 bp overlap
Foxj3 3 datasets
Motif DE_48h DE_48h-Foxj3_MA0851.2 9 bp overlap
Motif DE_60h DE_60h-Foxj3_MA0851.2 9 bp overlap
Motif DE_72h DE_72h-Foxj3_MA0851.2 9 bp overlap
Foxl2 3 datasets
Motif DE_48h DE_48h-Foxl2_MA1607.2 10 bp overlap
Motif DE_60h DE_60h-Foxl2_MA1607.2 10 bp overlap
Motif DE_72h DE_72h-Foxl2_MA1607.2 10 bp overlap
Foxo1 3 datasets
Motif DE_48h DE_48h-Foxo1_MA0480.3 7 bp overlap
Motif DE_60h DE_60h-Foxo1_MA0480.3 7 bp overlap
Motif DE_72h DE_72h-Foxo1_MA0480.3 7 bp overlap
Foxo3 3 datasets
Motif DE_48h DE_48h-Foxo3_MA0157.4 7 bp overlap
Motif DE_60h DE_60h-Foxo3_MA0157.4 7 bp overlap
Motif DE_72h DE_72h-Foxo3_MA0157.4 7 bp overlap
Foxq1 3 datasets
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
Motif DE_60h DE_60h-Foxq1_MA0040.2 10 bp overlap
Motif DE_72h DE_72h-Foxq1_MA0040.2 10 bp overlap
GATA1::TAL1 3 datasets
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 910 bp overlap
ChIP DE DE-GATA4-2 945 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 304 bp overlap
ChIP foregut GSE117136.GATA4.foregut 403 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 472 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 285 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 321 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 121 bp overlap
ChIP DE DE-GATA6-1 850 bp overlap
ChIP DE DE-GATA6-2 836 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 452 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 539 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 292 bp overlap
ChIP foregut GSE117136.GATA6.foregut 406 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 332 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 275 bp overlap
GRHL2 1 dataset
Motif DE_60h DE_60h-GRHL2_MA1105.3 8 bp overlap
HOXA4 3 datasets
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
Motif DE_72h DE_72h-HOXA4_MA1496.2 7 bp overlap
HOXB4 3 datasets
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
Motif DE_72h DE_72h-HOXB4_MA1499.2 6 bp overlap
HOXC4 3 datasets
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
Motif DE_72h DE_72h-HOXC4_MA1504.2 6 bp overlap
HOXD4 3 datasets
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Motif DE_72h DE_72h-HOXD4_MA1507.2 6 bp overlap
Lhx3 1 dataset
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MAFF 3 datasets
Motif DE_48h DE_48h-MAFF_MA0495.4 11 bp overlap
Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap
Motif DE_72h DE_72h-MAFF_MA0495.4 11 bp overlap
NFIL3 3 datasets
Motif DE_48h DE_48h-NFIL3_MA0025.3 9 bp overlap
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
Motif DE_72h DE_72h-NFIL3_MA0025.3 9 bp overlap
Nr2f6 1 dataset
Motif DE_60h DE_60h-Nr2f6_MA0677.2 13 bp overlap
ONECUT1 1 dataset
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
PAX6 1 dataset
Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap
POU4F2 2 datasets
Motif DE_48h DE_48h-POU4F2_MA0683.2 15 bp overlap
Motif DE_60h DE_60h-POU4F2_MA0683.2 15 bp overlap
POU5F1 3 datasets
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
Motif DE_72h DE_72h-POU5F1_MA1115.2 7 bp overlap
POU6F1 3 datasets
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
Motif DE_72h DE_72h-POU6F1_MA1549.2 7 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
Pax7 1 dataset
Motif DE_60h DE_60h-Pax7_MA0680.3 10 bp overlap
Pparg::Rxra 1 dataset
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 799 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 404 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 363 bp overlap
SOX11 1 dataset
ChIP GRANT-A519 GSE52146.SOX11.GRANT-A519 101 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 367 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 496 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Spz1 1 dataset
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
VEZF1 1 dataset
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZKSCAN1 1 dataset
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF135 1 dataset
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
ZNF143 3 datasets
Motif DE_48h DE_48h-ZNF143_MA0088.2 16 bp overlap
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
Motif DE_72h DE_72h-ZNF143_MA0088.2 16 bp overlap
ZNF354A 1 dataset
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF354C 3 datasets
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_72h DE_72h-ZNF354C_MA0130.1 6 bp overlap
ZNF460 1 dataset
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF652 1 dataset
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF684 1 dataset
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 159 bp overlap
Zfp809 3 datasets
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif DE_72h DE_72h-Zfp809_MA2125.1 9 bp overlap
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