chr9:36,118,241–36,119,014

chr9 : 36,118,241 – 36,119,014

773 bp 47 TFs 6 linked genes

This 773 bp open chromatin element is linked to 6 target genes and is bound by 47 transcription factors.

Linked Genes

6 genes

Gene	Expression	Dist. to TSS	Distance	Link type
GLIPR2		18.3 kb	Distal	Multiome
CLTA		72.5 kb	Distal	Multiome
RECK		81.5 kb	Distal	Multiome
GNE		140.0 kb	Distal	Multiome
TMEM8B		289.2 kb	Distal	Multiome
RNF38		369.1 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

47 transcription factors

ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 67 bp overlap

ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 193 bp overlap

ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 135 bp overlap

ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 98 bp overlap

ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 64 bp overlap

ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 238 bp overlap

BACH2 1 dataset

Motif DE_48h DE_48h-BACH2_MA1470.2 19 bp overlap

ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 176 bp overlap

ChIP K-562 ENCSR000ATU.CBX2.K-562 291 bp overlap

ChIP K-562 ENCSR000ATW.CBX8.K-562 75 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF262VBH 251 bp overlap

ChIP BLaER1 ENCFF460KDD 122 bp overlap

Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 360 bp overlap

ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 228 bp overlap

ChIP MCF-7 ENCFF282FWZ 227 bp overlap

ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 135 bp overlap

FOXA2 1 dataset

ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 388 bp overlap

GATA2 9 datasets

ChIP LNCaP GSE38391.GATA2.LNCaP 137 bp overlap

ChIP LNCaP GSE52725.GATA2.LNCaP 137 bp overlap

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 272 bp overlap

ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 243 bp overlap

ChIP SH-SY5Y ENCFF485YIB 405 bp overlap

ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 289 bp overlap

ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 231 bp overlap

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 200 bp overlap

ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 312 bp overlap

GATA4 5 datasets

ChIP DE DE-GATA4-1 501 bp overlap

ChIP DE DE-GATA4-2 519 bp overlap

Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 422 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 258 bp overlap

GATA5 1 dataset

Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap

GATA6 11 datasets

ChIP DE DE-GATA6-1 567 bp overlap

ChIP DE DE-GATA6-2 544 bp overlap

Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 527 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 524 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 773 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 663 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 773 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 758 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 513 bp overlap

ChIP foregut_KO GSE117136.GATA6.foregut_KO 277 bp overlap

Gata3 1 dataset

Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap

Hmga1 1 dataset

Motif DE_48h DE_48h-Hmga1_MA2124.1 8 bp overlap

IKZF1 2 datasets

Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap

ChIP K-562 ENCSR395HWC.IKZF1.K-562 305 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 223 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 175 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 309 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 95 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 255 bp overlap

ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 224 bp overlap

Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap

NEUROD1 4 datasets

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 249 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 327 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 327 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 229 bp overlap

ONECUT1 1 dataset

Motif DE_48h DE_48h-ONECUT1_MA0679.3 9 bp overlap

OSR2 2 datasets

Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap

Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap

POLR2A 1 dataset

ChIP thyroid gland ENCFF979LRR 381 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 126 bp overlap

Motif DE_48h DE_48h-Pgr_MA2323.1 17 bp overlap

RNF2 2 datasets

ChIP K-562 ENCSR820GND.RNF2.K-562 281 bp overlap

ChIP K562 ENCFF653BQJ 108 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 464 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 773 bp overlap

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 174 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 411 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 395 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 765 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 765 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 773 bp overlap

SMARCA4 1 dataset

ChIP K-562 ENCSR643VTW.SMARCA4.K-562 155 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 291 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 639 bp overlap

Stat5b 1 dataset

Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap

TCF12 1 dataset

ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 142 bp overlap

TRPS1 1 dataset

Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 300 bp overlap

ZFP36 1 dataset

ChIP K-562 ENCSR776CYN.ZFP36.K-562 130 bp overlap

Motif DE_48h DE_48h-ZIM3_MA1709.2 11 bp overlap

ZNF143 2 datasets

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 162 bp overlap

ZNF331 1 dataset

Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap

ZNF558 1 dataset

Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap

ZNF652 1 dataset

Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap

ZNF680 1 dataset

Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap

ZNF768 1 dataset

Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap

Zfp809 1 dataset

Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap