chr1 : 165,354,185 – 165,354,555
370 bp 52 TFs 1 linked gene
This 370 bp open chromatin element is linked to LMX1A and is bound by 52 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LMX1A 1.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:165,349,185 – 165,359,555
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 370 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 174 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 370 bp overlap
BRD4 1 dataset
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 292 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 370 bp overlap
CBX8 3 datasets
ChIP H1 ENCFF095JHA 144 bp overlap
ChIP H1 ENCFF095JHA 370 bp overlap
ChIP H1 ENCFF095JHA 366 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 343 bp overlap
ChIP H1 ENCFF329MAX 370 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 370 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 141 bp overlap
ESR1 4 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 244 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 370 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 211 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 170 bp overlap
EZH2 26 datasets
ChIP GM23338 ENCFF613YON 370 bp overlap
ChIP GM23338 ENCFF886DXX 333 bp overlap
ChIP H1 ENCFF232NZA 370 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 127 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 175 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 370 bp overlap
ChIP SK-N-SH ENCFF657FZK 248 bp overlap
ChIP T98G GSE112240.EZH2.T98G 156 bp overlap
ChIP astrocyte ENCFF365JTP 60 bp overlap
ChIP astrocyte ENCFF365JTP 370 bp overlap
ChIP astrocyte ENCFF365JTP 242 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 370 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 370 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 370 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 107 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 179 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 370 bp overlap
ChIP hESC GSE113817.EZH2.hESC 370 bp overlap
ChIP hepatocyte ENCFF118DKH 136 bp overlap
ChIP hepatocyte ENCFF552DZB 370 bp overlap
ChIP keratinocyte ENCFF070STK 268 bp overlap
ChIP keratinocyte ENCFF070STK 370 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 270 bp overlap
ChIP neural cell ENCFF610EPB 256 bp overlap
ChIP neural progenitor cell ENCFF018MKA 370 bp overlap
ChIP neural progenitor cell ENCFF472NFV 370 bp overlap
EZH2_phosphoT487 3 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 183 bp overlap
ChIP GM23338 ENCSR591DTH.EZH2_phosphoT487.GM23338 91 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 241 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 93 bp overlap
GTF2F1 2 datasets
ChIP K-562 GSE120104.GTF2F1.K-562 182 bp overlap
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 182 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 78 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 75 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 298 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 59 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 370 bp overlap
KLF15 1 dataset
Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MITF 1 dataset
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 151 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 102 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 370 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 61 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 370 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 122 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 84 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 370 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 347 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 370 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 167 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 370 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 365 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 151 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 370 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 370 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 370 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 167 bp overlap
SMARCB1 1 dataset
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 169 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 55 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 82 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 144 bp overlap
SRSF3 1 dataset
ChIP Hep-G2 GSE120104.SRSF3.Hep-G2 155 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 228 bp overlap
SUZ12 8 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 370 bp overlap
ChIP H1 ENCFF507HGF 101 bp overlap
ChIP H1 ENCFF881NFR 370 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 136 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 172 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 273 bp overlap
ChIP NT2/D1 ENCFF574SXS 370 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 370 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 73 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 182 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 242 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 57 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 110 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 127 bp overlap
ChIP WTC11 ENCFF699QGS 236 bp overlap
USF2 2 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 84 bp overlap
ChIP WTC11 ENCFF139JAW 197 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 370 bp overlap
ZFY 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 338 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF675 1 dataset
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
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