chr8 : 54,456,279 – 54,456,939
660 bp 46 TFs 1 linked gene
This 660 bp open chromatin element is linked to SOX17 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SOX17 994 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:54,451,279 – 54,461,939
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 660 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 315 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 256 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 290 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 281 bp overlap
BRD4 1 dataset
ChIP OVCAR-3_DMSO GSE77568.BRD4.OVCAR-3_DMSO 380 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 577 bp overlap
EOMES 2 datasets
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 301 bp overlap
EZH2 23 datasets
ChIP A673 ENCFF790MVL 294 bp overlap
ChIP A673 ENCFF790MVL 283 bp overlap
ChIP A673 ENCFF955JRZ 109 bp overlap
ChIP A673 ENCFF955JRZ 109 bp overlap
ChIP GM23248 ENCFF404ZHM 137 bp overlap
ChIP GM23248 ENCFF404ZHM 346 bp overlap
ChIP GM23338 ENCFF613YON 660 bp overlap
ChIP GM23338 ENCFF886DXX 260 bp overlap
ChIP H1 ENCFF232NZA 660 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 473 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 192 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 630 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 559 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 547 bp overlap
ChIP keratinocyte ENCFF070STK 452 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 196 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 131 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 53 bp overlap
ChIP myotube ENCFF857GWB 440 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 654 bp overlap
ChIP neural progenitor cell ENCFF018MKA 660 bp overlap
ChIP neural progenitor cell ENCFF472NFV 660 bp overlap
EZH2_phosphoT487 1 dataset
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 151 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 556 bp overlap
ChIP DE DE-FOXA2-2 508 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 549 bp overlap
ChIP DE DE-GATA4-2 652 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 529 bp overlap
ChIP DE DE-GATA6-2 643 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 660 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 619 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 565 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 566 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 660 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 646 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 277 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 102 bp overlap
ChIP HepG2 ENCFF854JLR 155 bp overlap
JARID2 4 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 376 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 660 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 157 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 461 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 1 dataset
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 541 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 494 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 267 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 268 bp overlap
PCGF2 2 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 660 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 660 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 660 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 317 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 182 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 361 bp overlap
ChIP hMSC_D10 GSE125166.RNF2.hMSC_D10 129 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 478 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 660 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 660 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 532 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 475 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 612 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 480 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 490 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 460 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 137 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 660 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 276 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 131 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 328 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 407 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 192 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 279 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 166 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 462 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 223 bp overlap
SUZ12 7 datasets
ChIP H1 ENCFF881NFR 660 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 306 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 290 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 404 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 163 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 243 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 180 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 644 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 401 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 144 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 231 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZNF184 1 dataset
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
Huangfu Lab · Publications · Resources · Contact