chr1 : 164,885,907 – 164,886,543
636 bp 69 TFs 0 linked genes
This 636 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:164,880,907 – 164,891,543
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 619 bp overlap
BRD4 4 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 168 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 195 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 593 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 605 bp overlap
CBFA2T2 1 dataset
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 193 bp overlap
CDX2 2 datasets
ChIP Caco-2_PROLIF GSE23436.CDX2.Caco-2_PROLIF 219 bp overlap
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 150 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 124 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 296 bp overlap
Crx 2 datasets
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DMRTC2 1 dataset
Motif DE_72h DE_72h-DMRTC2_MA1479.2 11 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 267 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 470 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 449 bp overlap
EZH2 1 dataset
ChIP hepatocyte ENCFF118DKH 219 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 472 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 228 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 487 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 313 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 636 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 212 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 636 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 521 bp overlap
ChIP DE DE-FOXA2-1 636 bp overlap
ChIP DE DE-FOXA2-2 636 bp overlap
GATA1 2 datasets
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA1::TAL1 2 datasets
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 184 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 180 bp overlap
ChIP DE DE-GATA4-1 636 bp overlap
ChIP DE DE-GATA4-2 636 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 542 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 176 bp overlap
ChIP foregut GSE117136.GATA4.foregut 634 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 636 bp overlap
GATA6 17 datasets
ChIP AGS GSE51705.GATA6.AGS 397 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 440 bp overlap
ChIP DE DE-GATA6-1 636 bp overlap
ChIP DE DE-GATA6-2 636 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 355 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 581 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 299 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 636 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 634 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 396 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 223 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 636 bp overlap
ChIP foregut GSE117136.GATA6.foregut 617 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 550 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 604 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 469 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 262 bp overlap
GSC 2 datasets
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
HNF1A 2 datasets
Motif DE_72h DE_72h-HNF1A_MA0046.3 13 bp overlap
ChIP HEE_1 GSE76376.HNF1A.HEE_1 247 bp overlap
HNF1B 3 datasets
Motif DE_72h DE_72h-HNF1B_MA0153.2 13 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 529 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 563 bp overlap
HNF4A 1 dataset
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 90 bp overlap
HOXA10 1 dataset
Motif DE_72h DE_72h-HOXA10_MA0899.2 9 bp overlap
HOXB4 2 datasets
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
Motif DE_72h DE_72h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
Motif DE_72h DE_72h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Motif DE_72h DE_72h-HOXD4_MA1507.2 6 bp overlap
HOXD9 1 dataset
Motif DE_72h DE_72h-HOXD9_MA0913.3 9 bp overlap
HSF1 2 datasets
Motif DE_60h DE_60h-HSF1_MA0486.2 13 bp overlap
Motif DE_72h DE_72h-HSF1_MA0486.2 13 bp overlap
HSF2 2 datasets
Motif DE_60h DE_60h-HSF2_MA0770.1 13 bp overlap
Motif DE_72h DE_72h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_60h DE_60h-HSF4_MA0771.1 13 bp overlap
Motif DE_72h DE_72h-HSF4_MA0771.1 13 bp overlap
MXI1 1 dataset
Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 475 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 470 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 182 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 156 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 178 bp overlap
NR1D1 1 dataset
Motif DE_72h DE_72h-NR1D1_MA1531.2 14 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap
OTX1 2 datasets
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 221 bp overlap
PITX1 2 datasets
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 2 datasets
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
RARA::RXRG 2 datasets
Motif DE_60h DE_60h-RARARXRG_MA1149.2 17 bp overlap
Motif DE_72h DE_72h-RARARXRG_MA1149.2 17 bp overlap
RHOXF1 2 datasets
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 192 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 120 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 635 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 304 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 617 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 520 bp overlap
SMAD3 2 datasets
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 281 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 2 datasets
ChIP Caco-2 GSE112946.SMAD4.Caco-2 212 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 163 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 143 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 176 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 527 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 373 bp overlap
STAT3 5 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 151 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 518 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 204 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 151 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 341 bp overlap
Stat2 2 datasets
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
Motif DE_72h DE_72h-Stat2_MA1623.2 10 bp overlap
Stat5b 2 datasets
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
Motif DE_72h DE_72h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 186 bp overlap
TAL1 6 datasets
ChIP K-562 ENCSR106FRG.TAL1.K-562 312 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 176 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 114 bp overlap
ChIP K-562_MYO1D-Hub_KO GSE107726.TAL1.K-562_MYO1D-Hub_KO 219 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 325 bp overlap
ChIP K562 ENCFF620GMX 385 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 264 bp overlap
TFAP4 1 dataset
Motif DE_72h DE_72h-TFAP4_MA1570.1 10 bp overlap
YAP1 1 dataset
ChIP MCF-10A GSE97972.YAP1.MCF-10A 203 bp overlap
YY1AP1 1 dataset
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 381 bp overlap
Yy1 1 dataset
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZBTB26 2 datasets
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_72h DE_72h-ZBTB26_MA1579.2 8 bp overlap
ZNF17 1 dataset
ChIP HEK293T GSE78099.ZNF17.HEK293T 113 bp overlap
ZNF274 2 datasets
Motif DE_60h DE_60h-ZNF274_MA1592.2 12 bp overlap
Motif DE_72h DE_72h-ZNF274_MA1592.2 12 bp overlap
ZNF282 1 dataset
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF418 2 datasets
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 280 bp overlap
Huangfu Lab · Publications · Resources · Contact