chr8 : 38,521,977 – 38,522,191
214 bp 47 TFs 1 linked gene
This 214 bp open chromatin element is linked to LINC03042 and is bound by 47 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC03042 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr8:38,516,977 – 38,527,191
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 24 datasets
ChIP 22Rv1_pLKO GSE109748.AR.22Rv1_pLKO 137 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 68 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 101 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 93 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 161 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 106 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 87 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 133 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 214 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 214 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 214 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 214 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 76 bp overlap
ChIP VCaP_R1881 GSE79128.AR.VCaP_R1881 66 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 84 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 130 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 169 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 140 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 163 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 108 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 117 bp overlap
ChIP breast_tumor_Male_17 GSE104399.AR.breast_tumor_Male_17 214 bp overlap
ChIP prostate GSE56288.AR.prostate 64 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 138 bp overlap
ARID1A 3 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 192 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 214 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 197 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 82 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 214 bp overlap
BAP1 1 dataset
ChIP UM-RC-6_BAP1-C91A-mutant GSE101987.BAP1.UM-RC-6_BAP1-C91A-mutant 214 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 201 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 150 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 117 bp overlap
BRD4 2 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 126 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 166 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 198 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 129 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 190 bp overlap
ERG 6 datasets
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 80 bp overlap
ChIP VCaP_DHT GSE79128.ERG.VCaP_DHT 152 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 113 bp overlap
ChIP VCaP_SH1_DHT GSE79128.ERG.VCaP_SH1_DHT 201 bp overlap
ChIP VCaP_SH2_DHT GSE79128.ERG.VCaP_SH2_DHT 150 bp overlap
ChIP VCaP_SH3_DHT GSE79128.ERG.VCaP_SH3_DHT 104 bp overlap
ESR1 1 dataset
ChIP T-47D ENCSR000BQD.ESR1.T-47D 132 bp overlap
ESRRA 6 datasets
ChIP A-549 ENCSR473SUA.ESRRA.A-549 124 bp overlap
ChIP A549 ENCFF977FTJ 131 bp overlap
ChIP BT-474 GSE81651.ESRRA.BT-474 214 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 171 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 214 bp overlap
ChIP WTC11 ENCFF591YCA 214 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 214 bp overlap
FOXA1 9 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 81 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 57 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 98 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 119 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 214 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 130 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 214 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 171 bp overlap
ChIP prostate_P7 GSE130408.FOXA1.prostate_P7 129 bp overlap
FOXA2 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 211 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 214 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 214 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 98 bp overlap
HNF1B 2 datasets
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 207 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 214 bp overlap
HOXB13 4 datasets
ChIP LNCaP GSE96652.HOXB13.LNCaP 128 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.HOXB13.prostate-cancer_PDX_141 185 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 85 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 80 bp overlap
KLF5 1 dataset
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 206 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 214 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 214 bp overlap
ChIP H1 ENCFF747ZPQ 208 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 214 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 214 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 213 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 214 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 214 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 193 bp overlap
ChIP hESC GSE18292.NANOG.hESC 136 bp overlap
ChIP hESC GSE20650.NANOG.hESC 154 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 163 bp overlap
NIPBL 3 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 198 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 214 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 194 bp overlap
NR3C1 5 datasets
ChIP A-549 ENCSR000BHG.NR3C1.A-549 133 bp overlap
ChIP A-549 ENCSR000BHF.NR3C1.A-549 124 bp overlap
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 56 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 118 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 148 bp overlap
NR5A2 2 datasets
ChIP A-549 ENCSR190GIW.NR5A2.A-549 214 bp overlap
ChIP A549 ENCFF834RVE 214 bp overlap
PGR 1 dataset
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 109 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 214 bp overlap
POU5F1 12 datasets
ChIP GM23338 ENCFF333SNB 214 bp overlap
ChIP H1 ENCFF698ZAP 193 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 214 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 188 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 214 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 122 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 214 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 159 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 214 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 214 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 155 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 198 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 214 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 214 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 214 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 169 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 214 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 189 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 168 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 82 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 214 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 203 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 209 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 185 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 208 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 213 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 214 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 214 bp overlap
ChIP WTC11 ENCFF688PEU 214 bp overlap
TBP 3 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 173 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 126 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 162 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 134 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 214 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 98 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 74 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 214 bp overlap
USF2 2 datasets
ChIP WA01 ENCSR000ECD.USF2.WA01 142 bp overlap
ChIP WTC11 ENCFF139JAW 214 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 55 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 54 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 209 bp overlap
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