chr6 : 165,668,762 – 165,669,657
895 bp 42 TFs 1 linked gene
This 895 bp open chromatin element is linked to PDE10A and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PDE10A 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:165,663,762 – 165,674,657
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
AR 30 datasets
ChIP LNCaP GSE110655.AR.LNCaP 495 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 191 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 369 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 673 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 154 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 321 bp overlap
ChIP LNCaP_DHT_GSK4H GSE114266.AR.LNCaP_DHT_GSK4H 159 bp overlap
ChIP LNCaP_ETOH GSE69043.AR.LNCaP_ETOH 203 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 397 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 296 bp overlap
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 389 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 279 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 392 bp overlap
ChIP LNCaP_Talen_Veh GSE89938.AR.LNCaP_Talen_Veh 250 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 182 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 185 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 482 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 443 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 501 bp overlap
ChIP VCaP GSE148358.AR.VCaP 177 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 278 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 227 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 148 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 250 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 145 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 173 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 149 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 368 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 342 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 285 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 143 bp overlap
BRD4 6 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 346 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 81 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 68 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 325 bp overlap
ChIP LNCaP-clone-FGC_DHT-Enzalutamide GSE118247.BRD4.LNCaP-clone-FGC_DHT-Enzalutamide 200 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 336 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 536 bp overlap
CTCF 2 datasets
ChIP astrocyte ENCFF558APA 235 bp overlap
ChIP astrocyte ENCFF558APA 466 bp overlap
ESR1 2 datasets
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 248 bp overlap
ChIP breast_tumor_Male_30 GSE104399.ESR1.breast_tumor_Male_30 167 bp overlap
EZH2 2 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 432 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 227 bp overlap
FOXA1 39 datasets
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 281 bp overlap
ChIP LAPC-4_CST_p358fs-V5 GSE123618.FOXA1.LAPC-4_CST_p358fs-V5 233 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 595 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 194 bp overlap
ChIP LNCaP-C4-2B GSE40050.FOXA1.LNCaP-C4-2B 538 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 272 bp overlap
ChIP LNCaP-C4-2B_DHT GSE40050.FOXA1.LNCaP-C4-2B_DHT 386 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 255 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 220 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 187 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.FOXA1.LNCaP_1F5_SIFOXA1 148 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 390 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 255 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 504 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 601 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 190 bp overlap
ChIP LNCaP_FA GSE114737.FOXA1.LNCaP_FA 386 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 195 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 346 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 197 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 167 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 136 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 158 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 514 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 426 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 51 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 361 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 372 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 431 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 281 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 145 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 317 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 486 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 277 bp overlap
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 173 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 260 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 256 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 506 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 330 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 708 bp overlap
ChIP DE DE-FOXA2-2 698 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 487 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 454 bp overlap
GATA2 5 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 231 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 231 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 270 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 161 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 148 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 485 bp overlap
ChIP DE DE-GATA4-2 666 bp overlap
ChIP foregut GSE117136.GATA4.foregut 392 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 244 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 545 bp overlap
ChIP DE DE-GATA6-2 635 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 256 bp overlap
HNRNPK 4 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 203 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 197 bp overlap
ChIP HepG2 ENCFF493GNS 84 bp overlap
ChIP HepG2 ENCFF826MXP 81 bp overlap
HOXB13 12 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 286 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 135 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 382 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 386 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 361 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 193 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 228 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 243 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 257 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 271 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 275 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 252 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 296 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 248 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 217 bp overlap
MYCN 4 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 342 bp overlap
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 193 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 560 bp overlap
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 103 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 283 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 193 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 222 bp overlap
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 209 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 324 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 158 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
RELA 1 dataset
ChIP 786-M1A GSE98012.RELA.786-M1A 121 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 336 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 523 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 242 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 273 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 242 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
TFAP4 1 dataset
ChIP LNCaP GSE28857.TFAP4.LNCaP 242 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 356 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 381 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 226 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 522 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 295 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 303 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 190 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 359 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 721 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 535 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 172 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 315 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 165 bp overlap
Huangfu Lab · Publications · Resources · Contact