chr6 : 99,604,755 99,605,078
323 bp 41 TFs 1 linked gene
This 323 bp open chromatin element is linked to PRDM13 and is bound by 41 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PRDM13 1.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:99,599,755 – 99,610,078
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 254 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 287 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 188 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 257 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 323 bp overlap
ChIP thyroid-cancer GSE114068.BRD4.thyroid-cancer 133 bp overlap
CTCF 1 dataset
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 99 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 298 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 115 bp overlap
EZH2 20 datasets
ChIP GM23338 ENCFF613YON 323 bp overlap
ChIP H1 ENCFF232NZA 323 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 323 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 323 bp overlap
ChIP astrocyte ENCFF365JTP 93 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 323 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 51 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 323 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 323 bp overlap
ChIP fibroblast of lung ENCFF479BAW 260 bp overlap
ChIP fibroblast of lung ENCFF479BAW 197 bp overlap
ChIP hepatocyte ENCFF118DKH 241 bp overlap
ChIP hepatocyte ENCFF118DKH 183 bp overlap
ChIP hepatocyte ENCFF552DZB 323 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 86 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 86 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 157 bp overlap
ChIP neural cell ENCFF610EPB 247 bp overlap
ChIP neural progenitor cell ENCFF018MKA 323 bp overlap
ChIP neural progenitor cell ENCFF472NFV 323 bp overlap
FOXA1 1 dataset
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 148 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 298 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 154 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 171 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 323 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 58 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 323 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 220 bp overlap
NFIA 3 datasets
ChIP Hep-G2 GSE97661.NFIA.Hep-G2 145 bp overlap
ChIP HepG2 ENCFF815HWK 220 bp overlap
ChIP K-562 GSE97661.NFIA.K-562 113 bp overlap
NFIC 3 datasets
ChIP Hep-G2 GSE108514.NFIC.Hep-G2 131 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 248 bp overlap
ChIP K562 ENCFF167YID 228 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 71 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 323 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 323 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 157 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 122 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 145 bp overlap
RNF2 3 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 243 bp overlap
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 153 bp overlap
ChIP H1 ENCFF239FFS 323 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 101 bp overlap
SMARCA4 2 datasets
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 184 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 147 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 144 bp overlap
SRSF1 1 dataset
ChIP Hep-G2 GSE120104.SRSF1.Hep-G2 148 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 57 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 323 bp overlap
SUZ12 7 datasets
ChIP GM12878 ENCFF498QAM 274 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 323 bp overlap
ChIP H1 ENCFF881NFR 323 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 79 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 60 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 119 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 235 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 93 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 201 bp overlap
ZBTB33 2 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 259 bp overlap
ChIP K562 ENCFF875HLX 139 bp overlap