chr1 : 95,061,557 95,061,908
351 bp 44 TFs 1 linked gene
This 351 bp open chromatin element is linked to CNN3-DT and is bound by 44 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CNN3-DT at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:95,056,557 – 95,066,908
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 212 bp overlap
ChIP K562 ENCFF938UXQ 351 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 71 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 176 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE138084.BRD2.K-562_DMSO 202 bp overlap
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 312 bp overlap
BRD4 5 datasets
ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 305 bp overlap
ChIP K-562_JQ1_2h GSE99178.BRD4.K-562_JQ1_2h 173 bp overlap
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 201 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 351 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 315 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 207 bp overlap
ChIP K562 ENCFF963TXY 307 bp overlap
CBFA2T3 3 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 294 bp overlap
ChIP K-562 GSE142227.CBFA2T3.K-562 209 bp overlap
ChIP K562 ENCFF673OEZ 103 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 201 bp overlap
CTBP1 1 dataset
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 270 bp overlap
CTCF 2 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 224 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 158 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 351 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 130 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 280 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 323 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 326 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 270 bp overlap
GATA1 8 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 58 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 138 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 119 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 150 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 286 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 137 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 254 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 301 bp overlap
GATA2 2 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 231 bp overlap
ChIP K562 ENCFF830LLA 351 bp overlap
GATA4 11 datasets
ChIP DE DE-GATA4-1 351 bp overlap
ChIP DE DE-GATA4-2 351 bp overlap
ChIP G296S GSE85628.GATA4.G296S 270 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 270 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 351 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 236 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 253 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 278 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 303 bp overlap
ChIP foregut GSE117136.GATA4.foregut 256 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 241 bp overlap
GATA6 6 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 116 bp overlap
ChIP DE DE-GATA6-1 342 bp overlap
ChIP DE DE-GATA6-2 351 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 329 bp overlap
ChIP foregut GSE117136.GATA6.foregut 303 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 351 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 220 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 287 bp overlap
ChIP K-562 GSE140325.HDAC2.K-562 125 bp overlap
HIF1A 1 dataset
ChIP macrophage_HYPO_IL GSE43109.HIF1A.macrophage_HYPO_IL 77 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 219 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 334 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 222 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 251 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 289 bp overlap
ChIP K562 ENCFF320GSD 139 bp overlap
NFYA 1 dataset
ChIP K-562 GSE26439.NFYA.K-562 185 bp overlap
NFYB 1 dataset
ChIP K-562 GSE26439.NFYB.K-562 226 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 329 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 201 bp overlap
NR3C1 1 dataset
ChIP HeLa-B2_GRKD_TA_TNFA GSE24518.NR3C1.HeLa-B2_GRKD_TA_TNFA 98 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 54 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 351 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 176 bp overlap
TAL1 4 datasets
ChIP K-562 ENCSR000EHB.TAL1.K-562 151 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 229 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 243 bp overlap
ChIP K562 ENCFF661CCK 277 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 285 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 230 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 351 bp overlap
ZNF319 2 datasets
ChIP K-562 ENCSR231PDA.ZNF319.K-562 115 bp overlap
ChIP K562 ENCFF561ZSB 105 bp overlap
ZNF512 1 dataset
ChIP K562 ENCFF601EMZ 233 bp overlap