chr1 : 89,598,329 – 89,599,008
679 bp 47 TFs 0 linked genes
This 679 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:89,593,329 – 89,604,008
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 76 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 477 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 239 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 243 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 244 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 118 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 55 bp overlap
CTCF 103 datasets
ChIP 22Rv1 ENCFF466OXN 79 bp overlap
ChIP 22Rv1 ENCFF466OXN 79 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 85 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 108 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 88 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 69 bp overlap
ChIP B cell ENCFF506FKC 64 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 407 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 118 bp overlap
ChIP C4-2B ENCFF821XVN 271 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 163 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 120 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 96 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 227 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 216 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 59 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 197 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 135 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 332 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 100 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 102 bp overlap
ChIP GM23338 ENCFF832KWE 92 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 265 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 157 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 50 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 195 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 77 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 69 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.CTCF.HEC-1-B_FFRR-insertion 74 bp overlap
ChIP HFFc6 ENCFF005CJI 75 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 128 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 74 bp overlap
ChIP ID00015 GSE76922.CTCF.ID00015 52 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 50 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 176 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 336 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 74 bp overlap
ChIP MDM_dNS1 GSE103477.CTCF.MDM_dNS1 56 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 174 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 135 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 59 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 207 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 221 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 297 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 76 bp overlap
ChIP Panc1 ENCFF056JQX 370 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 56 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 189 bp overlap
ChIP RWPE2 ENCFF911IEE 229 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 149 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 264 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 84 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 83 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 154 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 105 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 98 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 87 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 100 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 74 bp overlap
ChIP VCaP ENCFF858YQT 108 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 114 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 96 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 110 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 87 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 122 bp overlap
ChIP brain ENCFF163BBN 170 bp overlap
ChIP chondrocyte ENCFF134ORZ 154 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 59 bp overlap
ChIP endothelial cell ENCFF663LIE 75 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 173 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 87 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 54 bp overlap
ChIP glioblastoma_GBM3565 GSE139416.CTCF.glioblastoma_GBM3565 63 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 65 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 285 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 115 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 56 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 62 bp overlap
ChIP lung_left_upper-lobe ENCSR964BKO.CTCF.lung_left_upper-lobe 125 bp overlap
ChIP lung_left_upper-lobe ENCSR027FSZ.CTCF.lung_left_upper-lobe 54 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 50 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 214 bp overlap
ChIP natural killer cell ENCFF517SNI 103 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 60 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 54 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 170 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 113 bp overlap
ChIP neuron GSE115407.CTCF.neuron 269 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 74 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 80 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 84 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 51 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 129 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 94 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 187 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 57 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 152 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 147 bp overlap
ChIP spleen ENCFF121QGK 57 bp overlap
ChIP spleen ENCSR601FEB.CTCF.spleen 105 bp overlap
ChIP spleen ENCSR225YGX.CTCF.spleen 51 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 72 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 57 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 199 bp overlap
ELF3 2 datasets
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 165 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 173 bp overlap
EP300 2 datasets
ChIP tibial nerve ENCFF346AYA 496 bp overlap
ChIP tibial nerve ENCFF346AYA 50 bp overlap
ESR1 1 dataset
ChIP MCF-7_TAMR GSE86538.ESR1.MCF-7_TAMR 170 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 162 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 125 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 137 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 175 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 184 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 216 bp overlap
ChIP DE DE-FOXA2-2 269 bp overlap
ChIP HepG2 ENCFF570ABM 260 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 296 bp overlap
FOXK2 1 dataset
ChIP K-562 ENCSR302AWT.FOXK2.K-562 223 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap
IKZF1 1 dataset
ChIP K562 ENCFF348IBL 77 bp overlap
KLF12 1 dataset
ChIP HepG2 ENCFF395LSO 229 bp overlap
MLLT1 3 datasets
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 197 bp overlap
ChIP K-562 ENCSR107GRP.MLLT1.K-562 175 bp overlap
ChIP K562 ENCFF074XRJ 237 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 227 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 527 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 456 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 239 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
POLR2A 4 datasets
ChIP K562 ENCFF137JSF 491 bp overlap
ChIP K562 ENCFF215CWW 370 bp overlap
ChIP K562 ENCFF215CWW 211 bp overlap
ChIP K562 ENCFF262YXJ 483 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 498 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 497 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 280 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 259 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 401 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 21 datasets
ChIP GP5D GSE51234.RAD21.GP5D 142 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 321 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 186 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 473 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 52 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 249 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 167 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 86 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 59 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 75 bp overlap
ChIP MDM GSE103477.RAD21.MDM 81 bp overlap
ChIP MDM_-dNS1 GSE103477.RAD21.MDM_-dNS1 66 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 74 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 88 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 123 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 145 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 164 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 99 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 94 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 169 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 156 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 128 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 254 bp overlap
SMARCA4 2 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 212 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 484 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 270 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 420 bp overlap
SMC1 3 datasets
ChIP DKO GSE131606.SMC1.DKO 327 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 422 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 124 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 101 bp overlap
SMC3 7 datasets
ChIP GP5D GSE51234.SMC3.GP5D 259 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 201 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 201 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 201 bp overlap
ChIP HeLa-Kyoto_ESCO1-depleted GSE138405.SMC3.HeLa-Kyoto_ESCO1-depleted 111 bp overlap
ChIP HeLa_ESCO2-deltaPBMA_ctrl_siRNA GSE105004.SMC3.HeLa_ESCO2-deltaPBMA_ctrl_siRNA 77 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 466 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 145 bp overlap
SPI1 2 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 188 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 198 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 196 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 110 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 110 bp overlap
STAT6 1 dataset
ChIP K562 ENCFF444HZW 300 bp overlap
SUPT5H 2 datasets
ChIP K562 ENCFF902PAW 265 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 104 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 177 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 258 bp overlap
YY1 2 datasets
ChIP GM12892 ENCSR000BLT.YY1.GM12892 133 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 181 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 125 bp overlap
ZNF800 1 dataset
ChIP HepG2 ENCFF840FYM 155 bp overlap
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