chr5 : 33,501,900 – 33,502,225

325 bp 50 TFs 1 linked gene

This 325 bp open chromatin element is linked to TOMM40P3 and is bound by 50 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
TOMM40P3		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

50 transcription factors

AR 3 datasets

ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 100 bp overlap

ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 175 bp overlap

ChIP myofibroblast GSE90772.AR.myofibroblast 242 bp overlap

ARID1A 1 dataset

ChIP H9 GSE139260.ARID1A.H9 164 bp overlap

BRD4 5 datasets

ChIP 22Rv1_DHT-ABBV-744 GSE118247.BRD4.22Rv1_DHT-ABBV-744 235 bp overlap

ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 207 bp overlap

ChIP COLO-741 GSE73319.BRD4.COLO-741 280 bp overlap

ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 242 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 272 bp overlap

CBFB 1 dataset

ChIP ME-1 GSE46044.CBFB.ME-1 325 bp overlap

CCNT2 1 dataset

ChIP K-562 ENCSR000DOA.CCNT2.K-562 202 bp overlap

CDK6 1 dataset

ChIP KB GSE52469.CDK6.KB 122 bp overlap

CHD1 1 dataset

ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 186 bp overlap

CREB1 1 dataset

ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 194 bp overlap

CTCF 4 datasets

ChIP GSC23 GSE139416.CTCF.GSC23 85 bp overlap

ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 252 bp overlap

ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 249 bp overlap

ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 159 bp overlap

CTCFL 1 dataset

ChIP K-562 GSE70764.CTCFL.K-562 133 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF335XTP 274 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 130 bp overlap

EPAS1 1 dataset

ChIP 501-mel GSE95280.EPAS1.501-mel 193 bp overlap

ERG 2 datasets

ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 322 bp overlap

ChIP MCF-7 GSE23730.ERG.MCF-7 191 bp overlap

ESR1 2 datasets

ChIP Ishikawa GSE99905.ESR1.Ishikawa 325 bp overlap

ChIP MCF-7 GSE48930.ESR1.MCF-7 325 bp overlap

FLI1 1 dataset

ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 325 bp overlap

FOXA2 1 dataset

ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 325 bp overlap

GATA2 1 dataset

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 246 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 276 bp overlap

HNRNPLL 1 dataset

ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 161 bp overlap

JUN 1 dataset

ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 325 bp overlap

KDM4C 1 dataset

ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 264 bp overlap

NANOG 1 dataset

ChIP WA01 ERP004238.NANOG.WA01 231 bp overlap

NCAPH2 1 dataset

ChIP HEK293 GSE97540.NCAPH2.HEK293 325 bp overlap

NELFE 1 dataset

ChIP K-562_HS GSE112379.NELFE.K-562_HS 193 bp overlap

OGG1 4 datasets

ChIP HEK293 GSE89017.OGG1.HEK293 325 bp overlap

ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 325 bp overlap

ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 325 bp overlap

ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 325 bp overlap

OLIG2 1 dataset

ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 171 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 194 bp overlap

POU2F1 1 dataset

ChIP T-47D GSE148277.POU2F1.T-47D 254 bp overlap

POU5F1 2 datasets

ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 82 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 284 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 228 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap

RELA 5 datasets

ChIP 786-O GSE86092.RELA.786-O 181 bp overlap

ChIP HEK293 GSE89017.RELA.HEK293 242 bp overlap

ChIP HEK293_60_min GSE89017.RELA.HEK293_60_min 292 bp overlap

ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 325 bp overlap

ChIP HEK293_TNF-30min GSE75562.RELA.HEK293_TNF-30min 325 bp overlap

RORC 2 datasets

ChIP HCC70 GSE126380.RORC.HCC70 325 bp overlap

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 325 bp overlap

RXR 1 dataset

ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 308 bp overlap

SIRT6 1 dataset

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 154 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 325 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 325 bp overlap

STAT3 1 dataset

ChIP WA01 ERP004237.STAT3.WA01 325 bp overlap

TCF7 2 datasets

ChIP breast-organoid_BRCA1-mut GSE113909.TCF7.breast-organoid_BRCA1-mut 299 bp overlap

ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 325 bp overlap

TFIIIC 1 dataset

ChIP HEK293 GSE119418.TFIIIC.HEK293 257 bp overlap

TP63 1 dataset

ChIP breast-organoid GSE113909.TP63.breast-organoid 108 bp overlap

TRIM24 1 dataset

ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 250 bp overlap

TRIM25 1 dataset

ChIP BT-549 GSE79588.TRIM25.BT-549 325 bp overlap

TRIM28 2 datasets

ChIP HCT-116 GSE72622.TRIM28.HCT-116 91 bp overlap

ChIP hESC GSE115387.TRIM28.hESC 179 bp overlap

WDR5 1 dataset

ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 325 bp overlap

ZBTB33 2 datasets

ChIP K-562 ENCSR876GXA.ZBTB33.K-562 300 bp overlap

ChIP K562 ENCFF875HLX 325 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 325 bp overlap

ZFP57 1 dataset

ChIP hESC GSE115387.ZFP57.hESC 217 bp overlap

ZFX 1 dataset

ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 205 bp overlap

ZNF19 1 dataset

ChIP HEK293T GSE78099.ZNF19.HEK293T 287 bp overlap