chr1 : 87,723,253 87,723,539
286 bp 45 TFs 0 linked genes
This 286 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:87,718,253 – 87,728,539
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
Bcl11B 2 datasets
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 256 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 250 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 152 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 275 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
FOXA1 1 dataset
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 207 bp overlap
FOXA2 1 dataset
ChIP pancreas_CARN1618 ERP008682.FOXA2.pancreas_CARN1618 218 bp overlap
FOXH1 1 dataset
Motif ES_0h ES_0h-FOXH1_MA0479.2 8 bp overlap
GATA1 1 dataset
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 180 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 54 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 167 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 154 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 211 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 233 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
Motif ES_0h ES_0h-MEIS1_MA1639.2 9 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 140 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 286 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 228 bp overlap
ChIP H1 ENCFF747ZPQ 190 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 286 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 286 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 199 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 286 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 286 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 286 bp overlap
ChIP hESC GSE18292.NANOG.hESC 247 bp overlap
PBX1 2 datasets
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
Motif ES_0h ES_0h-PBX1_MA0070.2 9 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 246 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 286 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 286 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 210 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 217 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 281 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 199 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 286 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 243 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 222 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 286 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 286 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 147 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 286 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 286 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 286 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 103 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 258 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 286 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 251 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 163 bp overlap
TLE3 1 dataset
ChIP LAPC-4_TFS GSE123618.TLE3.LAPC-4_TFS 111 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZNF398 2 datasets
ChIP BG01V GSE133630.ZNF398.BG01V 158 bp overlap
ChIP H9 GSE133630.ZNF398.H9 99 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 204 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 284 bp overlap
ZNF675 1 dataset
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF770 1 dataset
ChIP HEK293 GSE76494.ZNF770.HEK293 82 bp overlap