chr4 : 141,389,652 141,389,919
267 bp 38 TFs 0 linked genes
This 267 bp open chromatin element has no linked target genes and is bound by 38 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:141,384,652 – 141,394,919
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
38 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 155 bp overlap
BRD4 1 dataset
ChIP HCC1395 GSE63581.BRD4.HCC1395 186 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 229 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 152 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 136 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 150 bp overlap
CRY2 1 dataset
ChIP U2OS GSE130602.CRY2.U2OS 244 bp overlap
CTCF 2 datasets
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 110 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 92 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 202 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 147 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 174 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 131 bp overlap
ESR1 3 datasets
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 232 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 177 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 267 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 181 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 267 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 115 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 73 bp overlap
GATA4 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 69 bp overlap
ChIP DE DE-GATA4-2 267 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 267 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 253 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 116 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 267 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 127 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 103 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 150 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 155 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 150 bp overlap
OTX2 2 datasets
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 120 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 126 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 74 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 130 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 97 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 180 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 267 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 180 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 161 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 225 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 96 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 188 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 267 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 156 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 151 bp overlap
TEAD4 5 datasets
ChIP H1 ENCFF778PAX 222 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 131 bp overlap
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 222 bp overlap
ChIP SK-N-SH ENCFF754TJT 235 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 162 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 134 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 246 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 136 bp overlap