chr4 : 116,599,795 – 116,600,171
376 bp 39 TFs 0 linked genes
This 376 bp open chromatin element has no linked target genes and is bound by 39 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:116,594,795 – 116,605,171
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
CTCF 129 datasets
ChIP 22Rv1 ENCFF466OXN 198 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 306 bp overlap
ChIP A549 ENCFF182TCQ 217 bp overlap
ChIP B cell ENCFF506FKC 376 bp overlap
ChIP BE2C ENCFF757SRF 289 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 158 bp overlap
ChIP C4-2B ENCFF821XVN 372 bp overlap
ChIP C4-2B ENCFF821XVN 310 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 129 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
Motif DE_36h DE_36h-CTCF_MA0139.2 15 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
ChIP DND-41 ENCFF913MRA 96 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 200 bp overlap
ChIP DOHH2 ENCFF637WNW 213 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 306 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 286 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 180 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 183 bp overlap
ChIP GM06990 ENCFF471OQT 243 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 237 bp overlap
ChIP GM10248 ENCFF083HVS 165 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM12864 ENCFF357DQE 259 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 154 bp overlap
ChIP GM12865 ENCFF067GFI 234 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 235 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 231 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 296 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 227 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 297 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 103 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 273 bp overlap
ChIP GM12872 ENCFF697BYI 255 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 199 bp overlap
ChIP GM12873 ENCFF711LOS 277 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 161 bp overlap
ChIP GM12874 ENCFF942MTD 134 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 284 bp overlap
ChIP GM12875 ENCFF081UCQ 227 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 227 bp overlap
ChIP GM12878 ENCFF217EAX 279 bp overlap
ChIP GM12878 ENCFF485TGR 241 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 217 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 138 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 196 bp overlap
ChIP GM13976 ENCFF896BYT 161 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM23338 ENCFF531QOI 267 bp overlap
ChIP GM23338 ENCFF772DML 192 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 162 bp overlap
ChIP H54 ENCFF255TVO 225 bp overlap
ChIP H9 ENCFF152GTF 339 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 294 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 132 bp overlap
ChIP HCT116 ENCFF003KHP 163 bp overlap
ChIP HCT116 ENCFF209YMI 254 bp overlap
ChIP HEK293 ENCFF498RMM 248 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 214 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 245 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 286 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 98 bp overlap
ChIP HepG2 ENCFF127KUP 227 bp overlap
ChIP HepG2 ENCFF194VBQ 280 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 315 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 226 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 145 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 105 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 244 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF598YSU 238 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 261 bp overlap
ChIP LNCAP ENCFF223HIG 376 bp overlap
ChIP LNCAP ENCFF700QXT 376 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP Loucy ENCFF359TVQ 237 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 272 bp overlap
ChIP MCF-7 ENCFF139NQI 270 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 209 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 288 bp overlap
ChIP NB4 ENCFF155DNY 248 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 217 bp overlap
ChIP OCI-LY1 ENCFF455ESK 241 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 335 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 270 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 312 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 240 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 363 bp overlap
ChIP PC-9 ENCFF539ULB 319 bp overlap
ChIP PC-9 ENCFF539ULB 106 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 376 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 172 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 140 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 236 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 94 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 288 bp overlap
ChIP WTC11 ENCFF658QVH 325 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 376 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 350 bp overlap
ChIP endodermal cell ENCFF471YCZ 322 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 197 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 191 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 241 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 223 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 123 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 225 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 142 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 173 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 168 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 105 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 181 bp overlap
ChIP neural progenitor cell ENCFF420RBO 272 bp overlap
ChIP testis ENCFF919VBQ 335 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 360 bp overlap
CTCFL 2 datasets
ChIP K-562 GSE70764.CTCFL.K-562 195 bp overlap
ChIP K562 ENCFF883NXC 171 bp overlap
ERF::FIGLA 3 datasets
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
Motif DE_24h DE_24h-ERFFIGLA_MA1934.2 13 bp overlap
Motif ES_0h ES_0h-ERFFIGLA_MA1934.2 13 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
KLF17 3 datasets
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
Motif DE_24h DE_24h-KLF17_MA1514.2 14 bp overlap
Motif ES_0h ES_0h-KLF17_MA1514.2 14 bp overlap
KLF5 3 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 317 bp overlap
MAZ 3 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_24h DE_24h-MAZ_MA1522.2 8 bp overlap
Motif ES_0h ES_0h-MAZ_MA1522.2 8 bp overlap
MXI1 3 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
Nr5A2 3 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif DE_24h DE_24h-Nr5A2_MA0505.3 9 bp overlap
Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap
PLAGL2 3 datasets
Motif DE_12h DE_12h-PLAGL2_MA1548.2 8 bp overlap
Motif DE_24h DE_24h-PLAGL2_MA1548.2 8 bp overlap
Motif ES_0h ES_0h-PLAGL2_MA1548.2 8 bp overlap
PRDM9 3 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif DE_24h DE_24h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Plagl1 6 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 173 bp overlap
ChIP H1 ENCFF967OJF 62 bp overlap
ChIP HepG2 ENCFF360ZSW 214 bp overlap
ChIP HepG2 ENCFF906QIS 221 bp overlap
ChIP K562 ENCFF634XYR 314 bp overlap
SMAD2 3 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif DE_24h DE_24h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMC3 1 dataset
ChIP GM12878 ENCFF085RLZ 239 bp overlap
SP4 3 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_24h DE_24h-SP4_MA0685.2 9 bp overlap
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 6 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 183 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TFAP2B 5 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0813.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0524.3 11 bp overlap
THRA 6 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif DE_24h DE_24h-THRA_MA1969.2 18 bp overlap
Motif DE_36h DE_36h-THRA_MA1969.2 18 bp overlap
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
THRB 3 datasets
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
Motif DE_24h DE_24h-THRB_MA1575.2 17 bp overlap
Motif ES_0h ES_0h-THRB_MA1575.2 17 bp overlap
ZFP14 3 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_24h DE_24h-ZFP14_MA1972.1 15 bp overlap
Motif ES_0h ES_0h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN5 3 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_24h DE_24h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF148 3 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_24h DE_24h-ZNF148_MA1653.2 10 bp overlap
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap
ZNF16 3 datasets
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
Motif DE_24h DE_24h-ZNF16_MA1654.2 21 bp overlap
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF213 3 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_24h DE_24h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF417 6 datasets
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
Motif DE_24h DE_24h-ZNF417_MA1727.2 7 bp overlap
Motif DE_36h DE_36h-ZNF417_MA1727.2 7 bp overlap
Motif DE_48h DE_48h-ZNF417_MA1727.2 7 bp overlap
Motif DE_60h DE_60h-ZNF417_MA1727.2 7 bp overlap
Motif ES_0h ES_0h-ZNF417_MA1727.2 7 bp overlap
ZNF530 3 datasets
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
Motif DE_24h DE_24h-ZNF530_MA1981.2 14 bp overlap
Motif ES_0h ES_0h-ZNF530_MA1981.2 14 bp overlap
ZNF682 3 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap
ZNF701 3 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF707 3 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
Motif ES_0h ES_0h-ZNF707_MA1715.1 15 bp overlap
Zfp961 6 datasets
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
Motif DE_24h DE_24h-Zfp961_MA2126.1 8 bp overlap
Motif DE_36h DE_36h-Zfp961_MA2126.1 8 bp overlap
Motif DE_48h DE_48h-Zfp961_MA2126.1 8 bp overlap
Motif DE_60h DE_60h-Zfp961_MA2126.1 8 bp overlap
Motif ES_0h ES_0h-Zfp961_MA2126.1 8 bp overlap
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