chr4 : 82,587,871 82,588,630
759 bp 53 TFs 0 linked genes
This 759 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:82,582,871 – 82,593,630
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 224 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 246 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 191 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 150 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 209 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 332 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 346 bp overlap
CTCF 1 dataset
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 210 bp overlap
DUX4 3 datasets
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 203 bp overlap
DUXA 1 dataset
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 165 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 330 bp overlap
ChIP DE DE-FOXA2-2 398 bp overlap
FOXC1 1 dataset
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
FOXD3 1 dataset
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
Foxq1 1 dataset
Motif DE_48h DE_48h-Foxq1_MA0040.2 10 bp overlap
GATA1 1 dataset
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
GATA2 4 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCFF485YIB 400 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 252 bp overlap
ChIP SK-N-SH ENCFF764OZD 359 bp overlap
GATA3 4 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 283 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 320 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 240 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 219 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 562 bp overlap
ChIP DE DE-GATA4-2 715 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 447 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 374 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 454 bp overlap
ChIP DE DE-GATA6-2 437 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 442 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 457 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 411 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 376 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 529 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 442 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 592 bp overlap
ChIP foregut GSE117136.GATA6.foregut 323 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 306 bp overlap
GFI1 1 dataset
Motif DE_48h DE_48h-GFI1_MA0038.3 11 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Gfi1B 1 dataset
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 322 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 231 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 328 bp overlap
ISL2 1 dataset
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 93 bp overlap
MEF2D 1 dataset
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 214 bp overlap
MYCN 7 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 185 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 430 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 417 bp overlap
ChIP Kelly GSE94782.MYCN.Kelly 52 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 167 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 219 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 154 bp overlap
Mecom 1 dataset
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 151 bp overlap
Nkx3-2 1 dataset
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 346 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 410 bp overlap
PKNOX2 1 dataset
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
PROP1 1 dataset
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 247 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 336 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 366 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 298 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 303 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 309 bp overlap
SNAI1 1 dataset
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
SOX12 1 dataset
Motif DE_48h DE_48h-SOX12_MA1561.2 10 bp overlap
SOX21 1 dataset
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
SREBF1 1 dataset
Motif DE_48h DE_48h-SREBF1_MA0829.3 10 bp overlap
SRY 1 dataset
Motif DE_48h DE_48h-SRY_MA0084.2 7 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 158 bp overlap
TCF12 1 dataset
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
TGIF1 1 dataset
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF354A 1 dataset
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap