chr4 : 79,826,909 – 79,827,719

810 bp 62 TFs 1 linked gene

This 810 bp open chromatin element is linked to PCAT4 and is bound by 62 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
PCAT4		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

62 transcription factors

BHLHE22 1 dataset

Motif DE_60h DE_60h-BHLHE22_MA1635.2 6 bp overlap

CRX 4 datasets

ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 304 bp overlap

ChIP retina_Hu21 GSE137311.CRX.retina_Hu21 220 bp overlap

ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 368 bp overlap

ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 452 bp overlap

CTBP1 1 dataset

ChIP K-562 ENCSR201NQZ.CTBP1.K-562 245 bp overlap

CTCF 3 datasets

ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 313 bp overlap

ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 444 bp overlap

ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 405 bp overlap

Crx 1 dataset

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

DMRTA2 1 dataset

Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap

DPRX 1 dataset

Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap

ELF1 1 dataset

Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 132 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_60h DE_60h-ETV5FOXI1_MA1946.2 12 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_60h DE_60h-ETV5FOXO1_MA1947.2 10 bp overlap

Erg 1 dataset

Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 429 bp overlap

ChIP DE DE-FOXA2-2 508 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_60h DE_60h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_60h DE_60h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_60h DE_60h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_60h DE_60h-FOXO1FLI1_MA1956.2 13 bp overlap

GABPA 1 dataset

Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap

GATA1::TAL1 1 dataset

Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 2 datasets

Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap

GATA4 5 datasets

ChIP DE DE-GATA4-1 673 bp overlap

ChIP DE DE-GATA4-2 810 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

ChIP foregut GSE117136.GATA4.foregut 419 bp overlap

ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 316 bp overlap

GATA5 1 dataset

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 586 bp overlap

ChIP DE DE-GATA6-2 773 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 328 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 711 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 356 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 406 bp overlap

ChIP foregut GSE117136.GATA6.foregut 424 bp overlap

GSC 1 dataset

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

Gata3 1 dataset

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

IKZF1 3 datasets

ChIP K-562 ENCSR395HWC.IKZF1.K-562 412 bp overlap

ChIP K562 ENCFF348IBL 442 bp overlap

ChIP K562 ENCFF348IBL 173 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap

MAFF 1 dataset

Motif DE_60h DE_60h-MAFF_MA0495.4 11 bp overlap

MEF2D 3 datasets

ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 288 bp overlap

ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 266 bp overlap

ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 313 bp overlap

Mafb 1 dataset

Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap

NFYB 1 dataset

Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap

NRL 2 datasets

Motif DE_60h DE_60h-NRL_MA0842.3 12 bp overlap

ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 290 bp overlap

Neurod2 1 dataset

Motif DE_60h DE_60h-Neurod2_MA1993.2 6 bp overlap

OTX1 1 dataset

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 385 bp overlap

Olig2 1 dataset

Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap

PITX1 1 dataset

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 163 bp overlap

PRDM9 1 dataset

Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap

RHOXF1 1 dataset

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

RORB 1 dataset

ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 403 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 488 bp overlap

SP5 1 dataset

Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap

SPI1 12 datasets

ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 235 bp overlap

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 256 bp overlap

ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 200 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 241 bp overlap

ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 251 bp overlap

ChIP EM-3 GSE128834.SPI1.EM-3 280 bp overlap

ChIP HL-60 ENCFF645GBT 271 bp overlap

ChIP K-562 ENCSR000BGW.SPI1.K-562 192 bp overlap

ChIP K-562 GSE70482.SPI1.K-562 159 bp overlap

ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 141 bp overlap

ChIP K562 ENCFF410ORC 205 bp overlap

ChIP THP-1 GSE128834.SPI1.THP-1 104 bp overlap

SREBF1 1 dataset

Motif DE_60h DE_60h-SREBF1_MA0829.3 10 bp overlap

SREBF2 1 dataset

Motif DE_60h DE_60h-SREBF2_MA0828.3 10 bp overlap

Spi1 1 dataset

Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap

Spz1 1 dataset

Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap

TFAP4 1 dataset

Motif DE_60h DE_60h-TFAP4_MA0691.1 10 bp overlap

TRPS1 1 dataset

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

Tcf12 1 dataset

Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap

ZBTB7A 1 dataset

Motif DE_60h DE_60h-ZBTB7A_MA0750.3 9 bp overlap

ZEB2 4 datasets

ChIP K-562 ENCSR004GKA.ZEB2.K-562 301 bp overlap

ChIP K-562 ENCSR322CFO.ZEB2.K-562 370 bp overlap

ChIP K562 ENCFF795CMH 477 bp overlap

ChIP K562 ENCFF975RXS 439 bp overlap

ZNF214 1 dataset

Motif DE_60h DE_60h-ZNF214_MA1975.2 13 bp overlap

ZNF35 1 dataset

Motif DE_60h DE_60h-ZNF35_MA2333.1 7 bp overlap