chr4 : 41,572,727 41,573,025
298 bp 47 TFs 0 linked genes
This 298 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:41,567,727 – 41,578,025
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 142 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 234 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 298 bp overlap
BRD2 1 dataset
ChIP K-562 GSE140325.BRD2.K-562 114 bp overlap
BRD4 3 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 243 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 238 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 184 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 55 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 281 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 298 bp overlap
ERG 2 datasets
ChIP ME-1 GSE46044.ERG.ME-1 234 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 245 bp overlap
ESRRG 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 298 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 194 bp overlap
ChIP DE DE-FOXA2-1 296 bp overlap
ChIP DE DE-FOXA2-2 298 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 159 bp overlap
GATA2 8 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 215 bp overlap
ChIP K562 ENCFF830LLA 298 bp overlap
ChIP ME-1 GSE46044.GATA2.ME-1 170 bp overlap
ChIP SH-SY5Y ENCFF485YIB 273 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 261 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 298 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 164 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 134 bp overlap
GATA3 1 dataset
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 171 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 298 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 241 bp overlap
ChIP DE DE-GATA4-1 298 bp overlap
ChIP DE DE-GATA4-2 298 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 272 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 64 bp overlap
GATA6 7 datasets
ChIP AGS GSE51705.GATA6.AGS 135 bp overlap
ChIP DE DE-GATA6-1 298 bp overlap
ChIP DE DE-GATA6-2 298 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 182 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 298 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 181 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 240 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 55 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 92 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 223 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 212 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 118 bp overlap
MYCN 3 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 296 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 100 bp overlap
ChIP SHEP-21N_24h GSE80151.MYCN.SHEP-21N_24h 71 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 234 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 171 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 184 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 298 bp overlap
POLR2A 2 datasets
ChIP adrenal gland ENCFF843OBJ 298 bp overlap
ChIP sigmoid colon ENCFF754JQR 155 bp overlap
RNF2 2 datasets
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 66 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 83 bp overlap
RUNX1 2 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 187 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 187 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 209 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 165 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 127 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 247 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 298 bp overlap
SMARCC1 1 dataset
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 298 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 298 bp overlap
SPI1 1 dataset
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 204 bp overlap
SS18 3 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 215 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 298 bp overlap
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 298 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 298 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 298 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 160 bp overlap
TAL1 1 dataset
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 194 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 91 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 91 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 298 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 59 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 59 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 88 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 139 bp overlap