chr1 : 72,281,236 72,281,554
318 bp 43 TFs 2 linked genes
This 318 bp open chromatin element is linked to NEGR1 and LINC02796 and is bound by 43 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
NEGR1 984 bp At TSS Proximity
LINC02796 1.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:72,276,236 – 72,286,554
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
BRD2 2 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 318 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 318 bp overlap
BRD4 8 datasets
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 318 bp overlap
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 314 bp overlap
ChIP MV4-11-B_BI00894999_35nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_35nM_4h 179 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 277 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 254 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 233 bp overlap
ChIP THP-1_iBET GSE138084.BRD4.THP-1_iBET 273 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 230 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_DMSO GSE116879.BRD9.MDA-MB-231_DMSO 238 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 318 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 173 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 280 bp overlap
CTCF 4 datasets
ChIP B cell ENCFF500PZO 284 bp overlap
ChIP astrocyte ENCFF558APA 282 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 274 bp overlap
ChIP sigmoid colon ENCFF219LPW 186 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 318 bp overlap
FOXA1 3 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 174 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 209 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 192 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 126 bp overlap
IRF4 5 datasets
ChIP B-cell GSE142493.IRF4.B-cell 225 bp overlap
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 293 bp overlap
ChIP OCI-Ly3 GSE56857.IRF4.OCI-Ly3 242 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 232 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 169 bp overlap
IRF5 1 dataset
ChIP GM12878 ENCSR976TBC.IRF5.GM12878 217 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 215 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 142 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 132 bp overlap
KMT2A 3 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 262 bp overlap
ChIP L826 GSE83671.KMT2A.L826 185 bp overlap
ChIP RS4-11 GSE38403.KMT2A.RS4-11 294 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 140 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 216 bp overlap
MED1 1 dataset
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 248 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 287 bp overlap
MYC 2 datasets
ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 157 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 90 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 144 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 297 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 151 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 305 bp overlap
ChIP sigmoid colon ENCFF748YVT 318 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 166 bp overlap
RAD21 1 dataset
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 223 bp overlap
RBPJ 1 dataset
ChIP THP-6_shCtrl GSE138516.RBPJ.THP-6_shCtrl 248 bp overlap
RNF2 1 dataset
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 301 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 270 bp overlap
SPI1 21 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 246 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 214 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 179 bp overlap
ChIP DC GSE123347.SPI1.DC 142 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 318 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 178 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 271 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 198 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 249 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 269 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 198 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 183 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 280 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 260 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 239 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 276 bp overlap
ChIP primary-monocyte_4h_donorO GSE128834.SPI1.primary-monocyte_4h_donorO 181 bp overlap
ChIP primary-monocyte_LPS-4h_donorO GSE128834.SPI1.primary-monocyte_LPS-4h_donorO 215 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 111 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 134 bp overlap
SPIB 3 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 204 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 267 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 318 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 261 bp overlap
STAT1 3 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 220 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 257 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 158 bp overlap
STAT3 3 datasets
ChIP OCI-Ly3 GSE50723.STAT3.OCI-Ly3 126 bp overlap
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 135 bp overlap
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 200 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 182 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_dTRIM24 GSE100571.TRIM24.MOLM-13_dTRIM24 246 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 247 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 191 bp overlap
ZNF512B 2 datasets
ChIP MCF-7 ENCSR761LRR.ZNF512B.MCF-7 127 bp overlap
ChIP MCF-7 ENCSR555DCF.ZNF512B.MCF-7 112 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 279 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 211 bp overlap