chr3 : 172,621,955 172,622,450
495 bp 54 TFs 0 linked genes
This 495 bp open chromatin element has no linked target genes and is bound by 54 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:172,616,955 – 172,627,450
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AR 4 datasets
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 226 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 119 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 151 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 165 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 144 bp overlap
BRD4 1 dataset
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 186 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 269 bp overlap
FOXA1 3 datasets
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 53 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 63 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 73 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 413 bp overlap
ChIP DE DE-FOXA2-2 421 bp overlap
GATA1 3 datasets
ChIP K-562 GSE107726.GATA1.K-562 176 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 201 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 204 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 490 bp overlap
ChIP DE DE-GATA4-2 495 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 445 bp overlap
ChIP DE DE-GATA6-2 495 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 424 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 495 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 495 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 495 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 467 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 495 bp overlap
HOXB13 2 datasets
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 59 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 130 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 386 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 208 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 325 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 311 bp overlap
NFKB1 1 dataset
Motif DE_36h DE_36h-NFKB1_MA0105.4 13 bp overlap
NFKB2 1 dataset
Motif DE_36h DE_36h-NFKB2_MA0778.2 11 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 69 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 128 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
PRDM9 1 dataset
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
RARA 1 dataset
Motif DE_36h DE_36h-RARA_MA0729.1 18 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 239 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 94 bp overlap
RFX1 1 dataset
Motif DE_36h DE_36h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_36h DE_36h-RFX3_MA0798.3 16 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 259 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 293 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 328 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 295 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 428 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 400 bp overlap
SMAD3 1 dataset
ChIP HCC1954 GSE104760.SMAD3.HCC1954 242 bp overlap
SMARCA4 1 dataset
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 249 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 258 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 328 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
STAT3 2 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 188 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 228 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZNF189 1 dataset
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF701 2 datasets
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
Motif DE_36h DE_36h-ZNF701_MA1987.2 17 bp overlap
ZNF740 1 dataset
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap