chr1 : 66,539,546 – 66,539,915
369 bp 41 TFs 1 linked gene
This 369 bp open chromatin element is linked to SGIP1 and is bound by 41 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SGIP1 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:66,534,546 – 66,544,915
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
AR 7 datasets
ChIP LNCaP GSE80256.AR.LNCaP 209 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 182 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 208 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 248 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 188 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 193 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 241 bp overlap
BRD2 2 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 243 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 251 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 324 bp overlap
BRD4 4 datasets
ChIP CHL-1_BAY123897 GSE95585.BRD4.CHL-1_BAY123897 369 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 261 bp overlap
ChIP HCC1806_300nMJQ1_24h GSE87418.BRD4.HCC1806_300nMJQ1_24h 346 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 182 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 329 bp overlap
CTCF 1 dataset
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 287 bp overlap
ESR1 22 datasets
ChIP MCF-7 GSE128445.ESR1.MCF-7 224 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 286 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 231 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 264 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 278 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 165 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 281 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 203 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 181 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 242 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 357 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 369 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 298 bp overlap
ChIP T-47D_JC4732 GSE126004.ESR1.T-47D_JC4732 241 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 343 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 316 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 280 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 334 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 213 bp overlap
ChIP breast_tumor_Male_17 GSE104399.ESR1.breast_tumor_Male_17 165 bp overlap
ChIP breast_tumor_Male_5 GSE104399.ESR1.breast_tumor_Male_5 210 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 213 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 369 bp overlap
FOXA1 11 datasets
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 223 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 211 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 217 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 220 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 258 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 274 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 343 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 358 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 369 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 315 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 257 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 209 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 218 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 210 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 208 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 262 bp overlap
MED1 2 datasets
ChIP G296S_4 GSE85628.MED1.G296S_4 369 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 68 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 111 bp overlap
NELFE 1 dataset
ChIP HeLa GSE125534.NELFE.HeLa 157 bp overlap
NR3C1 1 dataset
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 193 bp overlap
POLR2A 1 dataset
ChIP thyroid gland ENCFF979LRR 341 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 160 bp overlap
RELA 4 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 216 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 223 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 160 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 152 bp overlap
SMAD3 2 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 312 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 270 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 168 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 221 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 241 bp overlap
SOX2 2 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 208 bp overlap
ChIP KNS-62 GSE137459.SOX2.KNS-62 160 bp overlap
STAT3 1 dataset
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 242 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 106 bp overlap
TBX5 3 datasets
ChIP G296S GSE85628.TBX5.G296S 180 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 180 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 189 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 250 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 208 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 331 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 312 bp overlap
TP63 20 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 336 bp overlap
ChIP HCC95 GSE46837.TP63.HCC95 195 bp overlap
ChIP HaCaT_LacZ GSE60814.TP63.HaCaT_LacZ 310 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 369 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 292 bp overlap
ChIP HaCaT_dnRAS_TGFB GSE60814.TP63.HaCaT_dnRAS_TGFB 369 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 323 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 178 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 344 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 369 bp overlap
ChIP TT GSE46837.TP63.TT 244 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 283 bp overlap
ChIP keratinocyte GSE33571.TP63.keratinocyte 167 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 246 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 257 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 281 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 259 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 267 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 162 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 255 bp overlap
TP73_DELTANP 1 dataset
ChIP SaOS-2 GSE15780.TP73_DELTANP.SaOS-2 292 bp overlap
TP73_TA 1 dataset
ChIP SaOS-2 GSE15780.TP73_TA.SaOS-2 226 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 369 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 312 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 369 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 304 bp overlap
YY1 2 datasets
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 301 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 232 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 344 bp overlap
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