chr3 : 154,616,426 154,616,658
232 bp 42 TFs 0 linked genes
This 232 bp open chromatin element has no linked target genes and is bound by 42 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:154,611,426 – 154,621,658
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 70 bp overlap
AR 1 dataset
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 184 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 232 bp overlap
BRD4 2 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 146 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 232 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 137 bp overlap
CTCF 116 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 220 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 232 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 183 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 198 bp overlap
ChIP A673 ENCFF123WOM 232 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 157 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 205 bp overlap
ChIP DU145 GSE121021.CTCF.DU145 199 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 223 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 167 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 218 bp overlap
ChIP GM06990 ENCFF471OQT 230 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 168 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 232 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 168 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 125 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 105 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 126 bp overlap
ChIP GM12872 ENCFF697BYI 232 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 117 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 137 bp overlap
ChIP GM12874 ENCFF942MTD 219 bp overlap
ChIP GM23338 ENCFF531QOI 212 bp overlap
ChIP GM23338 ENCFF772DML 103 bp overlap
ChIP H1 ENCFF230QSV 159 bp overlap
ChIP H1 ENCFF414GZI 216 bp overlap
ChIP H1 ENCFF764RHO 114 bp overlap
ChIP H9 ENCFF152GTF 232 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 215 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 173 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 223 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 220 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 232 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 208 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 164 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 232 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 215 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 232 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 232 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 185 bp overlap
ChIP HCT-116 GSE92879.CTCF.HCT-116 145 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 213 bp overlap
ChIP HCT116 ENCFF003KHP 232 bp overlap
ChIP HCT116 ENCFF209YMI 232 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 158 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 195 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 151 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 197 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 80 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 232 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 205 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 166 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 149 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 150 bp overlap
ChIP HepG2 ENCFF127KUP 214 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 175 bp overlap
ChIP IMR-5 GSE78957.CTCF.IMR-5 91 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 145 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 99 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 126 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 226 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 225 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 163 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 192 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 146 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 201 bp overlap
ChIP MCF-7 ENCFF424NQR 159 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 210 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 140 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 151 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 184 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 232 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 232 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 232 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 159 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 129 bp overlap
ChIP OCI-LY1 ENCFF455ESK 232 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 232 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 232 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 209 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 179 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 232 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 193 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 121 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 232 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 92 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 143 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 232 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 197 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 232 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 232 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 162 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 232 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 159 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 184 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 158 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 187 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 230 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 200 bp overlap
ChIP endodermal cell ENCFF471YCZ 232 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 232 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 232 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 232 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 202 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 174 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 232 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 190 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 228 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 195 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 218 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 164 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 219 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 169 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 199 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 148 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 232 bp overlap
ESR1 3 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 232 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 232 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 112 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 229 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
MED1 2 datasets
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 77 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 135 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 211 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
PLAGL2 1 dataset
Motif DE_12h DE_12h-PLAGL2_MA1548.2 8 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 232 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 78 bp overlap
RAD21 20 datasets
ChIP H1 ENCFF698EWO 141 bp overlap
ChIP H1 ENCFF967OJF 227 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 232 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 232 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 173 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 207 bp overlap
ChIP HCT116 ENCFF568PEO 232 bp overlap
ChIP HepG2 ENCFF906QIS 211 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 106 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 127 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 176 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 232 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 211 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 210 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 162 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 232 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 213 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 128 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 196 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 167 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER_E2 197 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 129 bp overlap
SOX15 1 dataset
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 157 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 129 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 161 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 162 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap