chr3 : 135,067,209 135,067,929
720 bp 42 TFs 1 linked gene
This 720 bp open chromatin element is linked to EPHB1 and is bound by 42 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
EPHB1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:135,062,209 – 135,072,929
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 146 bp overlap
BACH1 1 dataset
ChIP GM12878 ENCFF576UEQ 365 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 597 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCFF521IZR 157 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 149 bp overlap
BRD4 7 datasets
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 229 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 123 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 460 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 140 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 720 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 720 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 284 bp overlap
ChIP BLaER1 ENCFF274GAT 193 bp overlap
ChIP BLaER1 ENCFF364PUR 156 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF813OXE 186 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 167 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 437 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 414 bp overlap
ChIP DE DE-FOXA2-2 415 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 317 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 278 bp overlap
ChIP DE DE-GATA6-2 383 bp overlap
GATAD2B 1 dataset
ChIP GM12878 ENCFF781IAU 381 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 418 bp overlap
HNF4A 2 datasets
ChIP GP5D GSE51234.HNF4A.GP5D 588 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
IKZF1 2 datasets
ChIP GM12878 ENCFF753XDO 412 bp overlap
ChIP GM12878 ENCFF824TGK 334 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 350 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 665 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 696 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 359 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 463 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCFF658MHR 345 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 720 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 285 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 162 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 179 bp overlap
MED1 1 dataset
ChIP NCI-H2171 GSE36354.MED1.NCI-H2171 169 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 173 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCFF615CWQ 272 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 214 bp overlap
NFE2 1 dataset
ChIP K562 ENCFF047YKA 405 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 377 bp overlap
NFIB 1 dataset
ChIP MCF-7 ENCFF925CGH 160 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 69 bp overlap
NR2F1 1 dataset
ChIP GM12878 ENCFF273VKX 301 bp overlap
POLR2A 1 dataset
ChIP Raji ENCFF613VGX 332 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 513 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 580 bp overlap
RBPJ 2 datasets
ChIP HCC1599 GSE116871.RBPJ.HCC1599 566 bp overlap
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 446 bp overlap
SMAD1 1 dataset
ChIP GM12878 ENCFF130NRZ 143 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 421 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 482 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 467 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 355 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 222 bp overlap
STAT3 3 datasets
ChIP A139 GSE85579.STAT3.A139 278 bp overlap
ChIP A139 GSE85579.STAT3.A139 151 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 232 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 343 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 309 bp overlap