chr3 : 134,243,196 134,243,591
395 bp 43 TFs 1 linked gene
This 395 bp open chromatin element is linked to RYK and is bound by 43 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RYK 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:134,238,196 – 134,248,591
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
43 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K-562 ENCSR426URK.AFF1.K-562 185 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 172 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 179 bp overlap
CREBBP 1 dataset
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 127 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF364PUR 67 bp overlap
ChIP BLaER1 ENCFF798NMV 50 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 137 bp overlap
ESR1 1 dataset
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 105 bp overlap
ETV5 1 dataset
ChIP K562 ENCFF336FFA 63 bp overlap
FEZF1 1 dataset
ChIP HEK293 ENCFF528YED 52 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 163 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 395 bp overlap
ChIP DE DE-GATA4-2 395 bp overlap
ChIP foregut GSE117136.GATA4.foregut 366 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 395 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 154 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 261 bp overlap
ChIP DE DE-GATA6-1 389 bp overlap
ChIP DE DE-GATA6-2 395 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 349 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 388 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 298 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 395 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 395 bp overlap
ChIP foregut GSE117136.GATA6.foregut 395 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 299 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 395 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 347 bp overlap
GTF2F1 1 dataset
ChIP HeLa-S3 ENCFF868VGE 114 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 296 bp overlap
HNF4A 3 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 111 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 143 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 395 bp overlap
ChIP K562 ENCFF771OHZ 205 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 201 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 97 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 102 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 122 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 175 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 395 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 166 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 166 bp overlap
PHIP 4 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 50 bp overlap
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 139 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 227 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 118 bp overlap
PRDM10 3 datasets
ChIP HEK293 ENCFF145WQQ 326 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 234 bp overlap
ChIP K562 ENCFF740YLK 136 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 166 bp overlap
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 166 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 360 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 370 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 317 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 199 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 150 bp overlap
SNAI2 1 dataset
ChIP PC-9_1DF GSE131687.SNAI2.PC-9_1DF 203 bp overlap
TARDBP 1 dataset
ChIP HepG2 ENCFF356JNC 51 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 59 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 223 bp overlap
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 360 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 237 bp overlap
TEAD4 5 datasets
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 189 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 185 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 182 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 395 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 251 bp overlap
USP7 1 dataset
ChIP HEK293T GSE61048.USP7.HEK293T 148 bp overlap
YY1AP1 3 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 361 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.YY1AP1.PC-9_1DF_DMSO 262 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 391 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 129 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 204 bp overlap
ZNF792 1 dataset
ChIP HEK293T GSE78099.ZNF792.HEK293T 59 bp overlap
ZNF84 1 dataset
ChIP HEK293T GSE78099.ZNF84.HEK293T 108 bp overlap