chr1 : 63,321,551 63,321,712
161 bp 44 TFs 4 linked genes
This 161 bp open chromatin element is linked to 4 target genes and is bound by 44 transcription factors.
Linked Genes
4 genes
Distance
Gene Expression Dist. to TSS Distance Link type
FOXD3-AS1 at TSS At TSS Proximity
FOXD3 853 bp At TSS Proximity
LINC00466 4.3 kb Proximal Proximity
MIR6068 5.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:63,316,551 – 63,326,712
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 55 bp overlap
BACH1 1 dataset
ChIP H1 ENCFF282VDB 100 bp overlap
BRD4 2 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 103 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 151 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 161 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 161 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 135 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 147 bp overlap
CTCF 1 dataset
ChIP spleen ENCFF065CBS 161 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 58 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 161 bp overlap
EZH2 14 datasets
ChIP GM23248 ENCFF404ZHM 161 bp overlap
ChIP GM23248 ENCFF404ZHM 86 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 161 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 112 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 95 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 161 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 146 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 161 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 161 bp overlap
ChIP hepatocyte ENCFF552DZB 161 bp overlap
ChIP keratinocyte ENCFF070STK 161 bp overlap
ChIP neural progenitor cell ENCFF018MKA 161 bp overlap
ChIP neural progenitor cell ENCFF472NFV 161 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 102 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 61 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 106 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 142 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 111 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 161 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 104 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 161 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCFF065NZG 106 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 59 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 161 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 136 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 59 bp overlap
NFE2L1 1 dataset
ChIP WTC11 ENCFF644BPU 161 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 141 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 161 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 161 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 161 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 90 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 129 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 161 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 161 bp overlap
RBBP5 1 dataset
ChIP H1 ENCFF905HFL 110 bp overlap
RFX5 1 dataset
ChIP H1 ENCFF605EGG 100 bp overlap
RNF2 2 datasets
ChIP WA01 ENCSR784VUY.RNF2.WA01 161 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 123 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 87 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 86 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 70 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 161 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 161 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 161 bp overlap
SMARCC1 2 datasets
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 92 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 161 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 59 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 161 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 103 bp overlap
SUZ12 2 datasets
ChIP NCCIT GSE71675.SUZ12.NCCIT 161 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 161 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 139 bp overlap
TBP 3 datasets
ChIP hESC GSE122298.TBP.hESC 108 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 161 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 161 bp overlap
TGIF2 2 datasets
ChIP WTC11 ENCFF649SHI 161 bp overlap
ChIP WTC11 ENCFF649SHI 131 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 95 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 157 bp overlap
ZNF232 1 dataset
ChIP WTC11 ENCFF901BGD 161 bp overlap