chr3 : 121,598,593 – 121,599,014
421 bp 94 TFs 1 linked gene
This 421 bp open chromatin element is linked to FBXO40 and is bound by 94 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
FBXO40 5.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:121,593,593 – 121,604,014
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
ASCL1 3 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
Motif DE_36h DE_36h-ASCL1_MA1631.2 9 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Ahr::Arnt 3 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_48h DE_48h-AhrArnt_MA0006.2 5 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CTCF 1 dataset
ChIP erythroid GSE67783.CTCF.erythroid 162 bp overlap
CTCFL 3 datasets
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
Motif DE_36h DE_36h-CTCFL_MA1102.3 8 bp overlap
Motif DE_48h DE_48h-CTCFL_MA1102.3 8 bp overlap
Crx 3 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
DMRTC2 1 dataset
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
Dlx2 1 dataset
Motif DE_36h DE_36h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_36h DE_36h-Dlx5_MA1476.3 8 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 155 bp overlap
EN2 1 dataset
Motif DE_36h DE_36h-EN2_MA0642.3 7 bp overlap
EOMES 4 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 154 bp overlap
ETV2::DRGX 2 datasets
Motif DE_36h DE_36h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_48h DE_48h-ETV2DRGX_MA1940.2 12 bp overlap
ETV5::DRGX 2 datasets
Motif DE_36h DE_36h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_48h DE_48h-ETV5DRGX_MA1944.2 12 bp overlap
ETV5::HOXA2 2 datasets
Motif DE_36h DE_36h-ETV5HOXA2_MA1948.2 12 bp overlap
Motif DE_48h DE_48h-ETV5HOXA2_MA1948.2 12 bp overlap
FEZF2 1 dataset
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
FIGLA 3 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOSL2 3 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
Motif DE_36h DE_36h-FOSL2_MA0478.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2_MA0478.2 10 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 277 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 272 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 296 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 339 bp overlap
GBX1 1 dataset
Motif DE_36h DE_36h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
GLI3 3 datasets
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Motif DE_36h DE_36h-GLI3_MA1491.3 15 bp overlap
Motif DE_48h DE_48h-GLI3_MA1491.3 15 bp overlap
GSC 3 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 3 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Gli1 3 datasets
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Motif DE_36h DE_36h-Gli1_MA1990.2 10 bp overlap
Motif DE_48h DE_48h-Gli1_MA1990.2 10 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
HSF1 1 dataset
Motif DE_36h DE_36h-HSF1_MA0486.2 13 bp overlap
HSF2 1 dataset
Motif DE_36h DE_36h-HSF2_MA0770.1 13 bp overlap
HSF4 1 dataset
Motif DE_36h DE_36h-HSF4_MA0771.1 13 bp overlap
INSM1 3 datasets
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
LBX1 1 dataset
Motif DE_36h DE_36h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif DE_36h DE_36h-LHX9_MA0701.3 7 bp overlap
LIN54 1 dataset
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
MGA::EVX1 6 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
MTF1 3 datasets
Motif DE_12h DE_12h-MTF1_MA0863.1 14 bp overlap
Motif DE_36h DE_36h-MTF1_MA0863.1 14 bp overlap
Motif DE_48h DE_48h-MTF1_MA0863.1 14 bp overlap
MYOD1 3 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
Motif DE_36h DE_36h-MYOD1_MA0499.3 9 bp overlap
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NFIA 1 dataset
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
NFIB 3 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif DE_36h DE_36h-NFIB_MA1643.2 17 bp overlap
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
NFIC 4 datasets
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
Motif DE_36h DE_36h-NFIC_MA1527.2 15 bp overlap
Motif DE_36h DE_36h-NFIC_MA1527.2 15 bp overlap
Motif DE_48h DE_48h-NFIC_MA1527.2 15 bp overlap
NFIX 2 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_36h DE_36h-NFIX_MA1528.2 14 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
OTX1 3 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 3 datasets
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 259 bp overlap
PITX1 3 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 3 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 309 bp overlap
PRRX2 1 dataset
Motif DE_36h DE_36h-PRRX2_MA0075.4 7 bp overlap
Pgr 1 dataset
Motif DE_36h DE_36h-Pgr_MA2323.1 17 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
RHOXF1 3 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 1 dataset
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 297 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 227 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 229 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_36h DE_36h-SPIC_MA0687.2 13 bp overlap
Stat4 1 dataset
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_36h DE_36h-Stat5a_MA1624.2 9 bp overlap
Stat6 1 dataset
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
TBR1 6 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX18 4 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif DE_36h DE_36h-TBX19_MA0804.2 17 bp overlap
TBX2 3 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX20 3 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TBX21 3 datasets
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 6 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX5 3 datasets
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 421 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 421 bp overlap
TCF4 3 datasets
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
Motif DE_36h DE_36h-TCF4_MA0830.3 8 bp overlap
Motif DE_48h DE_48h-TCF4_MA0830.3 8 bp overlap
TFAP2A 1 dataset
Motif DE_36h DE_36h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_36h DE_36h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 1 dataset
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 1 dataset
Motif DE_36h DE_36h-TFAP2E_MA1569.2 9 bp overlap
Tbx6 3 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
ZEB1 3 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 276 bp overlap
ZNF214 3 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif DE_36h DE_36h-ZNF214_MA1975.2 13 bp overlap
Motif DE_48h DE_48h-ZNF214_MA1975.2 13 bp overlap
ZNF263 1 dataset
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
ZNF549 3 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
Motif DE_48h DE_48h-ZNF549_MA1728.2 8 bp overlap
ZNF692 3 datasets
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
Motif DE_36h DE_36h-ZNF692_MA1986.2 8 bp overlap
Motif DE_48h DE_48h-ZNF692_MA1986.2 8 bp overlap
ZNF708 1 dataset
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
ZSCAN29 2 datasets
Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap
Motif DE_36h DE_36h-ZSCAN29_MA1602.2 11 bp overlap
Zfp809 3 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap
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