chr1 : 62,177,448 – 62,178,351
903 bp 70 TFs 2 linked genes
This 903 bp open chromatin element is linked to L1TD1 and USP1 and is bound by 70 transcription factors.
Linked Genes
2 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
L1TD1 17.0 kb Distal Multiome
USP1 259.2 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:62,172,448 – 62,183,351
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 144 bp overlap
ATOH7 3 datasets
Motif DE_36h DE_36h-ATOH7_MA1468.1 10 bp overlap
Motif DE_48h DE_48h-ATOH7_MA1468.1 10 bp overlap
Motif DE_60h DE_60h-ATOH7_MA1468.1 10 bp overlap
Atoh1 3 datasets
Motif DE_36h DE_36h-Atoh1_MA1467.3 7 bp overlap
Motif DE_48h DE_48h-Atoh1_MA1467.3 7 bp overlap
Motif DE_60h DE_60h-Atoh1_MA1467.3 7 bp overlap
BCL6B 1 dataset
Motif DE_48h DE_48h-BCL6B_MA0731.1 17 bp overlap
BHLHA15 3 datasets
Motif DE_36h DE_36h-BHLHA15_MA0607.2 10 bp overlap
Motif DE_48h DE_48h-BHLHA15_MA0607.2 10 bp overlap
Motif DE_60h DE_60h-BHLHA15_MA0607.2 10 bp overlap
BRD4 3 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 180 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 88 bp overlap
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 94 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 214 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 209 bp overlap
CUX1 1 dataset
Motif DE_48h DE_48h-CUX1_MA0754.3 9 bp overlap
CUX2 1 dataset
Motif DE_48h DE_48h-CUX2_MA0755.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 319 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 124 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 197 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 197 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 655 bp overlap
ChIP DE DE-FOXA2-2 687 bp overlap
GATA1::TAL1 8 datasets
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_48h DE_48h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_60h DE_60h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 4 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 13 datasets
ChIP DE DE-GATA4-1 795 bp overlap
ChIP DE DE-GATA4-2 778 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 528 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 371 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 355 bp overlap
GATA5 8 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 19 datasets
ChIP DE DE-GATA6-1 650 bp overlap
ChIP DE DE-GATA6-2 669 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 825 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 757 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 572 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 631 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 809 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 805 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 729 bp overlap
ChIP foregut GSE117136.GATA6.foregut 307 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 363 bp overlap
Gata3 8 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HAND2 3 datasets
Motif DE_36h DE_36h-HAND2_MA1638.2 6 bp overlap
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HMBOX1 4 datasets
Motif DE_36h DE_36h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_48h DE_48h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_60h DE_60h-HMBOX1_MA0895.2 7 bp overlap
Motif DE_72h DE_72h-HMBOX1_MA0895.2 7 bp overlap
Hand1::Tcf3 4 datasets
Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_48h DE_48h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_60h DE_60h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif DE_72h DE_72h-Hand1Tcf3_MA0092.2 9 bp overlap
IRF2 4 datasets
Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
Motif DE_72h DE_72h-IRF2_MA0051.2 16 bp overlap
Lhx3 4 datasets
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
Motif DE_48h DE_48h-Lhx3_MA0135.2 12 bp overlap
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
Motif DE_72h DE_72h-Lhx3_MA0135.2 12 bp overlap
MAX 3 datasets
ChIP MDA-MB-468 GSE81381.MAX.MDA-MB-468 113 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 210 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 328 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 197 bp overlap
Mecom 4 datasets
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
Motif DE_48h DE_48h-Mecom_MA0029.2 11 bp overlap
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
Msgn1 3 datasets
Motif DE_36h DE_36h-Msgn1_MA1524.3 10 bp overlap
Motif DE_48h DE_48h-Msgn1_MA1524.3 10 bp overlap
Motif DE_60h DE_60h-Msgn1_MA1524.3 10 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 190 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 519 bp overlap
Motif DE_36h DE_36h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_48h DE_48h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_60h DE_60h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 6 datasets
Motif DE_36h DE_36h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_36h DE_36h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_48h DE_48h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_48h DE_48h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_60h DE_60h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_60h DE_60h-NEUROG2_MA1642.2 7 bp overlap
NFATC3 7 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 56 bp overlap
Neurod2 3 datasets
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_48h DE_48h-Neurod2_MA0668.3 8 bp overlap
Motif DE_60h DE_60h-Neurod2_MA0668.3 8 bp overlap
Nfatc1 7 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
OLIG1 3 datasets
Motif DE_36h DE_36h-OLIG1_MA0826.1 10 bp overlap
Motif DE_48h DE_48h-OLIG1_MA0826.1 10 bp overlap
Motif DE_60h DE_60h-OLIG1_MA0826.1 10 bp overlap
OLIG2 3 datasets
Motif DE_36h DE_36h-OLIG2_MA0678.1 10 bp overlap
Motif DE_48h DE_48h-OLIG2_MA0678.1 10 bp overlap
Motif DE_60h DE_60h-OLIG2_MA0678.1 10 bp overlap
OLIG3 3 datasets
Motif DE_36h DE_36h-OLIG3_MA0827.1 10 bp overlap
Motif DE_48h DE_48h-OLIG3_MA0827.1 10 bp overlap
Motif DE_60h DE_60h-OLIG3_MA0827.1 10 bp overlap
ONECUT1 2 datasets
Motif DE_48h DE_48h-ONECUT1_MA0679.3 9 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 439 bp overlap
ONECUT2 2 datasets
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 236 bp overlap
Motif DE_48h DE_48h-ONECUT2_MA0756.3 8 bp overlap
PGR 4 datasets
Motif DE_36h DE_36h-PGR_MA2327.1 9 bp overlap
Motif DE_48h DE_48h-PGR_MA2327.1 9 bp overlap
Motif DE_60h DE_60h-PGR_MA2327.1 9 bp overlap
Motif DE_72h DE_72h-PGR_MA2327.1 9 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_48h DE_48h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm15 3 datasets
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 3 datasets
Motif DE_36h DE_36h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RORC 4 datasets
Motif DE_36h DE_36h-RORC_MA1151.2 10 bp overlap
Motif DE_48h DE_48h-RORC_MA1151.2 10 bp overlap
Motif DE_60h DE_60h-RORC_MA1151.2 10 bp overlap
Motif DE_72h DE_72h-RORC_MA1151.2 10 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 203 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 142 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 104 bp overlap
SMAD2 4 datasets
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
Motif DE_60h DE_60h-SMAD2_MA1964.2 6 bp overlap
Motif DE_72h DE_72h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 871 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 826 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 903 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 903 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 558 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 903 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 706 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 151 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 215 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 206 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 68 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 211 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 376 bp overlap
TAL1::TCF3 3 datasets
Motif DE_36h DE_36h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_48h DE_48h-TAL1TCF3_MA0091.2 10 bp overlap
Motif DE_60h DE_60h-TAL1TCF3_MA0091.2 10 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 222 bp overlap
TCF21 3 datasets
Motif DE_36h DE_36h-TCF21_MA1568.2 10 bp overlap
Motif DE_48h DE_48h-TCF21_MA1568.2 10 bp overlap
Motif DE_60h DE_60h-TCF21_MA1568.2 10 bp overlap
TEAD1 1 dataset
Motif DE_48h DE_48h-TEAD1_MA0090.4 9 bp overlap
TFAP4 3 datasets
Motif DE_36h DE_36h-TFAP4_MA1570.1 10 bp overlap
Motif DE_48h DE_48h-TFAP4_MA1570.1 10 bp overlap
Motif DE_60h DE_60h-TFAP4_MA1570.1 10 bp overlap
TRPS1 8 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf21 3 datasets
Motif DE_36h DE_36h-Tcf21_MA0832.2 10 bp overlap
Motif DE_48h DE_48h-Tcf21_MA0832.2 10 bp overlap
Motif DE_60h DE_60h-Tcf21_MA0832.2 10 bp overlap
ZNF184 2 datasets
Motif DE_48h DE_48h-ZNF184_MA2120.1 13 bp overlap
Motif DE_60h DE_60h-ZNF184_MA2120.1 13 bp overlap
ZNF324 4 datasets
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
Motif DE_72h DE_72h-ZNF324_MA1977.2 14 bp overlap
ZNF416 4 datasets
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF547 1 dataset
ChIP HEK293T GSE78099.ZNF547.HEK293T 146 bp overlap
ZNF558 4 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
Motif DE_72h DE_72h-ZNF558_MA2335.1 29 bp overlap
ZNF75A 2 datasets
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
ZNF768 4 datasets
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
Motif DE_72h DE_72h-ZNF768_MA1731.2 9 bp overlap
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