chr3 : 86,554,384 86,554,718
334 bp 49 TFs 0 linked genes
This 334 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:86,549,384 – 86,559,718
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Arntl 1 dataset
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
BHLHE40 6 datasets
Motif DE_12h DE_12h-BHLHE40_MA0464.3 8 bp overlap
ChIP GM12878 ENCFF521IZR 162 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 334 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 250 bp overlap
ChIP Hep-G2 ENCSR000EDT.BHLHE40.Hep-G2 179 bp overlap
ChIP HepG2 ENCFF961RID 284 bp overlap
BHLHE41 1 dataset
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 334 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 62 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 230 bp overlap
CDK7 1 dataset
ChIP Jurkat_THZ2102 GSE60027.CDK7.Jurkat_THZ2102 126 bp overlap
CTCF 15 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 204 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM12865 ENCFF067GFI 257 bp overlap
ChIP GM23338 ENCFF531QOI 281 bp overlap
ChIP H1 ENCFF764RHO 230 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 205 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 144 bp overlap
ChIP NCI-H929 ENCFF305JAB 184 bp overlap
ChIP NCI-H929 ENCFF305JAB 334 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 219 bp overlap
ChIP endodermal cell ENCFF471YCZ 261 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 189 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP mammary epithelial cell ENCFF873ERE 165 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 186 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 292 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 131 bp overlap
EZH2 1 dataset
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 121 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA3 3 datasets
ChIP Kelly GSE65664.GATA3.Kelly 164 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 99 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 144 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 149 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 180 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 111 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 208 bp overlap
HES1 1 dataset
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
HES2 1 dataset
Motif DE_12h DE_12h-HES2_MA0616.3 9 bp overlap
HIF1A 1 dataset
Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 325 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 150 bp overlap
MAX 1 dataset
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP Kelly GSE138295.MYC.Kelly 250 bp overlap
MYCN 4 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 291 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 307 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 141 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 260 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 181 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 75 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 141 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 87 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 103 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 172 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 237 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 145 bp overlap
SOHLH2 1 dataset
Motif DE_12h DE_12h-SOHLH2_MA1560.2 8 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 309 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 298 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 130 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TCFL5 1 dataset
Motif DE_12h DE_12h-TCFL5_MA0632.3 8 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 123 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 123 bp overlap
TFE3 1 dataset
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 182 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 181 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap