chr3 : 41,002,179 41,002,519
340 bp 48 TFs 0 linked genes
This 340 bp open chromatin element has no linked target genes and is bound by 48 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:40,997,179 – 41,007,519
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 172 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 133 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 126 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 174 bp overlap
BCL6 3 datasets
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 206 bp overlap
ChIP OCI-Ly1 GSE107920.BCL6.OCI-Ly1 206 bp overlap
ChIP OCI-Ly7 GSE44420.BCL6.OCI-Ly7 272 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 142 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 340 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 228 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 127 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 224 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 340 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 235 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 306 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 246 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 218 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 125 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 282 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 99 bp overlap
CTCF 3 datasets
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 99 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 67 bp overlap
ChIP endodermal cell ENCFF471YCZ 205 bp overlap
CTNNB1 2 datasets
ChIP LS180 GSE31939.CTNNB1.LS180 301 bp overlap
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 234 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 125 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
ESR1 3 datasets
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 323 bp overlap
ChIP MCF-7_estradiol-aldosterone_45min GSE99626.ESR1.MCF-7_estradiol-aldosterone_45min 271 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 166 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 225 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 317 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 340 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 321 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 340 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 162 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 310 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 340 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 340 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAFK 1 dataset
ChIP OCI-Ly7 GSE47784.MAFK.OCI-Ly7 147 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 198 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 201 bp overlap
MED1 6 datasets
ChIP LS180 GSE39277.MED1.LS180 177 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 173 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 185 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 233 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 251 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 340 bp overlap
MYB 1 dataset
ChIP PF-382 GSE94000.MYB.PF-382 188 bp overlap
MYC 3 datasets
ChIP LS174T_BI8622 GSE59223.MYC.LS174T_BI8622 86 bp overlap
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 279 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 170 bp overlap
NCOA1 1 dataset
ChIP LS180 GSE39277.NCOA1.LS180 132 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NCOR2 1 dataset
ChIP LS180 GSE39277.NCOR2.LS180 112 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 186 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 225 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 340 bp overlap
REST 3 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 340 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 166 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 309 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 240 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 340 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 340 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 340 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 340 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 340 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 333 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 251 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 304 bp overlap
TCF3 1 dataset
ChIP Ramos GSE139810.TCF3.Ramos 159 bp overlap
TCF4 2 datasets
ChIP LS180 GSE31939.TCF4.LS180 125 bp overlap
ChIP LS180_125 GSE31939.TCF4.LS180_125 96 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 210 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 55 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 76 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap