chr3 : 34,856,243 – 34,856,801

558 bp 57 TFs 0 linked genes

This 558 bp open chromatin element has no linked target genes and is bound by 57 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

57 transcription factors

ATF2 2 datasets

Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap

ChIP GM12878 ENCSR000BQK.ATF2.GM12878 207 bp overlap

BRD4 2 datasets

ChIP DND41_E GSE54379.BRD4.DND41_E 215 bp overlap

ChIP DND41_E GSE54379.BRD4.DND41_E 184 bp overlap

CHD7 1 dataset

ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 215 bp overlap

CTCF 1 dataset

ChIP neural ENCSR822CEA.CTCF.neural 406 bp overlap

EBF1 3 datasets

ChIP MUTUL GSE75503.EBF1.MUTUL 160 bp overlap

ChIP MUTUL GSE75503.EBF1.MUTUL 263 bp overlap

ChIP NALM-6 GSE126300.EBF1.NALM-6 145 bp overlap

EHF 1 dataset

Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap

ELF1 2 datasets

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 262 bp overlap

ELF2 1 dataset

Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

ELK4 1 dataset

Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 558 bp overlap

ChIP neural cell ENCFF442QNK 319 bp overlap

ERF::FOXO1 1 dataset

Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap

ERG 1 dataset

ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 139 bp overlap

ESR1 1 dataset

ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 131 bp overlap

ETS1 1 dataset

ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 286 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

GABPA 1 dataset

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

GATA4 1 dataset

ChIP G296S_4 GSE85628.GATA4.G296S_4 188 bp overlap

GATA6 1 dataset

ChIP AGS GSE51936.GATA6.AGS 83 bp overlap

HSF1 3 datasets

ChIP MCF-7_hyperthermia-15min GSE137558.HSF1.MCF-7_hyperthermia-15min 289 bp overlap

ChIP MO91 GSE45852.HSF1.MO91 180 bp overlap

ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 281 bp overlap

IKZF1 4 datasets

ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 161 bp overlap

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 276 bp overlap

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 141 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

IKZF3 1 dataset

ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 64 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

KMT2A 1 dataset

ChIP L826 GSE83671.KMT2A.L826 120 bp overlap

MED1 1 dataset

ChIP G296S_4 GSE85628.MED1.G296S_4 273 bp overlap

MEIS1 3 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

ChIP SEM GSE38339.MEIS1.SEM 124 bp overlap

MEIS2 1 dataset

Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap

MEIS3 2 datasets

Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap

MXI1 1 dataset

ChIP neural cell ENCFF623HQN 407 bp overlap

NEUROD1 1 dataset

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 221 bp overlap

NKX2-5 1 dataset

ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 177 bp overlap

PBX1 1 dataset

ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 203 bp overlap

PBX3 1 dataset

Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap

PKNOX1 1 dataset

Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 217 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 107 bp overlap

PRDM1 1 dataset

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

RAD21 2 datasets

ChIP neural ENCSR198ZYJ.RAD21.neural 558 bp overlap

ChIP neural cell ENCFF564MOT 260 bp overlap

REL 1 dataset

Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap

REST 2 datasets

ChIP neural ENCSR000BTV.REST.neural 363 bp overlap

ChIP neural cell ENCFF882LXX 317 bp overlap

RUNX1 1 dataset

ChIP ALL-SIL GSE102209.RUNX1.ALL-SIL 64 bp overlap

SMAD2 2 datasets

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 448 bp overlap

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 305 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 343 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 389 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 319 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 445 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 249 bp overlap

SMARCA2 1 dataset

ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 294 bp overlap

SMARCA4 4 datasets

ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 558 bp overlap

ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 417 bp overlap

ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 241 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 349 bp overlap

SMC3 2 datasets

ChIP neural ENCSR404BPV.SMC3.neural 558 bp overlap

ChIP neural cell ENCFF795YGY 477 bp overlap

TCF3 1 dataset

ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 158 bp overlap

ZBTB11 1 dataset

Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap

ZBTB7A 1 dataset

Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap