chr3 : 34,292,647 34,293,300
653 bp 40 TFs 0 linked genes
This 653 bp open chromatin element has no linked target genes and is bound by 40 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:34,287,647 – 34,298,300
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
40 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 85 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 436 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 169 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 265 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 341 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 309 bp overlap
CTCF 9 datasets
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 168 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 201 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 255 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 149 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 147 bp overlap
ChIP endodermal cell ENCFF471YCZ 185 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 230 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 212 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 338 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 346 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 320 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 166 bp overlap
FLI1 5 datasets
ChIP A-673 GSE99959.FLI1.A-673 653 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 653 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 653 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 362 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 648 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 348 bp overlap
ChIP DE DE-FOXA2-2 418 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 395 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 218 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 383 bp overlap
ChIP SK-N-SH ENCFF764OZD 358 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 339 bp overlap
GATA3 7 datasets
ChIP BE2C GSE65664.GATA3.BE2C 181 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 430 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 350 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 222 bp overlap
ChIP SH-SY5Y ENCFF475HYF 433 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 377 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 245 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 476 bp overlap
ChIP DE DE-GATA4-2 653 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 593 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 487 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 398 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 90 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 391 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 247 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 494 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 653 bp overlap
MYCN 2 datasets
ChIP NB-1643 GSE94782.MYCN.NB-1643 226 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 228 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 474 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 392 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 271 bp overlap
RAD21 3 datasets
ChIP IMR-5 GSE78957.RAD21.IMR-5 154 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 112 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 285 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 283 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 363 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 100 bp overlap
SMARCA4 2 datasets
ChIP NGP GSE134626.SMARCA4.NGP 188 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 132 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 147 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 399 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 291 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 317 bp overlap
TCF4 1 dataset
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 372 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 452 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 452 bp overlap
YY1 3 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 118 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 140 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 173 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 417 bp overlap